Background
Triple negative breast cancer (TNBC) occurs at higher frequency in African Americans compared with Caucasians. It is unclear if the biology of TNBC is different in African American versus Caucasians. In this study, we sought to evaluate racial differences in the molecular pathology of TNBC.
Methods
Using data from The Cancer Genome Atlas, we identified TNBC patients with information on race. We analyzed differences in clinical characteristics, tumor somatic mutations, and gene expression patterns by race from whole exome and microarray data.
Results
1104 patients were identified, of which 178 had TNBC. TNBC was more frequent in African American than Caucasians (33.3% vs 14.9%). Although, more African American than Caucasians overall were classified as basal-like from PAM50 gene expression (34.8% vs 16.1%), no differences in the TNBC cohort were observed. Median tumor somatic mutation counts were higher in African American versus Caucasians (39.5 vs 34), but no racial differences in the mutation counts in TNBC were observed. Somatic mutation analysis revealed racial differences in specific high prevalence genes in all patients- [TP53: 46% in African American vs 27% in Caucasians; PIK3CA: 23% in African American vs 34% in Caucasians; and MLL3: 12% in African American vs 6% in Caucasians]. TNBC patients did not have any specific high prevalence genes associated with racial differences. There were no racial differences in gene expression patterns in selected genes involved in breast cancer biology. Overall, African Americans had shorter TTP and worse DFS. Racial differences in clinical outcomes were not observed in TNBC.
Conclusion
The mutational landscape of TNBC is similar between African Americans and Caucasians. The higher frequency of TNBC in African Americans is therefore not associated with a different genomic profile of common established tumor regulatory pathway genes. Other modifiable factors may exist that contribute to the racial disparity in TNBC.