We recently purified to near homogeneity a novel type of regulatory protein for smg p25A, a ras p21-like GTP-binding protein, from bovine brain cytosol. This regulatory protein, named smg p25A GDP dissociation inhibitor (GDI), regulates the GDP-GTP exchange reaction of smg p25A by inhibiting dissociation of GDP from and subsequent binding of GTP to it. In the present studies, we isolated and sequenced the cDNA of smg p25A GDI from a bovine brain cDNA library by using an oligonucleotide probe designed from the partial amino acid sequence of purified smg p25A GDI. The cDNA has an open reading frame that encodes a protein of 447 amino acids with a calculated Mr of 50,565. This Mr is similar to those of the purified smg p25A GDI estimated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and sucrose density gradient ultracentrifugation, which are about 54,000 and 65,000, respectively. The isolated cDNA is expressed in Escherichia coli, and the encoded protein exhibits GDI activity. smg p25A GDI is hydrophilic overall, except for one hydrophobic region near the N terminus. smg p25A GDI shares low amino acid sequence homology with the Saccharomyces cerevisiae CDC25-encoded protein, which has been suggested to serve as a factor that regulates the GDP-GTP exchange reaction of the yeast RAS2-encoded protein, but not with the fry subunits of GTP-binding proteins having an afry subunit structure, such as G. and Gi. The smg p25A GDI mRNA was present in various tissues, including not only tissues in which smg p25A was detectable but also tissues in which it was not detectable. This fact has raised the possibility that smg p25A GDI interacts with another G protein in tissues in which smg p25A is absent. smg p25A was first purified from bovine brain membranes and has been characterized (11). The primary structure of smg p25A has been determined on the basis of the nucleotide sequence of its cDNA (16). The physical and kinetic properties of smg p25A indicate that this protein is a member of a superfamily of ras p21-ras p21-like GTP-binding proteins (G proteins) (for reviews, see references 1 and 27). The counterpart of smg p25A in rats has been reported to be the rab3-encoded protein (34). Although the functions of this G protein have not been clarified, it has been shown that the smg p25A gene is highly expressed in nerve tissues (21,23) and that its mRNA level is increased markedly after differentiation of PC12 cells into neuronlike cells by nerve growth factor or dibutyryl cyclic AMP (23). Our recent immunocytochemical studies have revealed that smg p25A is found not only in neuronal cells and adrenal glands but also in other secretory cells, such as endocrine and/or exocrine cells of the pancreas, parotid gland, and pituitary gland (17; A. Mizoguchi, S. Kim, T. Ueda, A. Kikuchi, H. Yorifuji, N. Hirokawa, and Y. Takai, J. Biol. Chem., in press). Moreover, our results indicate that in brain tissue, smg p25A is found mostly in presynapses, where it is localized mainly in synaptic plasma membranes and partly in synap...