Boreal ecosystems store large quantities of carbon but are increasingly vulnerable to carbon loss due to disturbance and climate warming. The boreal region in Alaska and Canada, largely underlain by discontinuous permafrost, presents a challenging landscape for itemizing carbon sources and sinks in soil and vegetation. The roles of fire, forest succession, and the presence (or absence) of permafrost on carbon cycle, vegetation, and hydrologic processes have been the focus of multidisciplinary research in boreal ecosystems for the past 20 years. However, projections of a warming future climate, an increase in fire severity and extent, and the potential degradation of permafrost could lead to major landscape and carbon cycle changes over the next 20 to 50 years. To assist land managers in interior Alaska in adapting and managing for potential changes in the carbon cycle we developed this review paper by incorporating an overview of the climate, ecosystem processes, vegetation, and soil regimes. Our objective is to provide a synthesis of the most current carbon storage estimates and measurements to guide policy and land management decisions on how to best manage carbon sources and sinks. We surveyed estimates of aboveground and belowground carbon stocks for interior Alaska boreal ecosystems and summarized methane and carbon dioxide f luxes. These data have been converted into similar units to facilitate comparison across ecosystem compartments. We identify potential changes in the carbon cycle with climate change and human disturbance. A novel research question is how compounding disturbances affect carbon sources and sinks associated with boreal ecosystem processes. Finally, we provide recommendations to address the challenges facing land managers in efforts to manage carbon cycle processes. The results of this study can be used for carbon cycle management in other locations within the boreal biome which encompasses a broad distribution from 45° to 83° north.