Background: Fabry disease (FD) is an X-linked lysosomal storage disease resulting in tissue accumulation of sphingolipids. Key myocardial processes that lead to adverse outcomes in FD include storage, hypertrophy, inflammation and fibrosis. These are quantifiable by multi-parametric Cardiovascular Magnetic Resonance (CMR). Recent developments in CMR perfusion mapping allow rapid in-line perfusion quantification permitting broader clinical application, including the assessment of microvascular dysfunction. We hypothesized that microvascular dysfunction in FD would be associated with storage, fibrosis and oedema. Methods: A prospective, observational study of 44 FD patients (49 years, 43% male, 24 (55%) with left ventricular hypertrophy (LVH)) and 27 healthy controls with multi-parametric CMR including vasodilator stress perfusion mapping. Myocardial blood flow (MBF) was measured and its associations with other processes investigated. Results: Compared to LVH-FD, LVH+ FD had higher LV ejection fraction (73% vs 68%), more LGE (85% vs 15%) and a lower stress MBF (1.76 vs 2.36ml/g/min). The reduction in stress MBF was more pronounced in the subendocardium than subepicardium. LVH-FD had lower stress MBF than controls (2.36 vs 3.00ml/g/min, p=0.002). Across all FD, LGE and low native T1 were independently associated with reduced stress MBF. On a per-segment basis stress MBF was independently associated with wall thickness, T2, ECV and LGE. Conclusions: FD patients have reduced perfusion, particularly in the subendocardium with greater reductions with LVH, storage, edema and scar. Perfusion is reduced even without LVH suggesting it is an early disease marker. Clinical perspective Fabry disease (FD) is a slowly progressive multisystem storage disease. Progressive cardiac involvement is the primary cause of premature death. Therapy is available but expensive. Myocardial phenotype development and pathways is not well understood and the impact of treatment and the timing of initiation is uncertain. Recently, cardiovascular magnetic resonance has begun to unravel phenotype development because, as well as hypertrophy and fibrosis (using late gadolinium enhancement), storage can now be measured (using T1 mapping) and edema/inflammation (using T2 mapping). Microvascular dysfunction is also thought also to play a role. CMR perfusion mapping can now quantify thisboth concurrently with the other assessments and without using ionizing radiation, more easily permitting the assessment of early disease. We performed multi-parametric CMR in FD including perfusion mapping. Compared to healthy volunteers, patients with FD had reduced stress myocardial blood flow (MBF). This occurred even before hypertrophy. It was most marked subendocardially, was worse when there was storage and, regionally, where there was fibrosis. This implies that microvascular dysfucntion is an early disease feature and could contribute to the progression from storage to fibrosis (and hence heart failure and arrhythmia). Because it may relate to endothelial rather t...