2019
DOI: 10.1038/s41596-019-0146-6
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Quantitative imaging of sleep behavior in Caenorhabditis elegans and larval Drosophila melanogaster

Abstract: Sleep is nearly universal among animals, yet remains poorly understood. Recent work has leveraged simple model organisms, such as Caenorhabditis elegans and Drosophila melanogaster larvae, to investigate the genetic and neural bases of sleep. However, manual methods of recording sleep behavior in these systems are labor intensive and low in throughput. To address these limitations, we developed methods for quantitative imaging of individual animals cultivated in

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Cited by 19 publications
(22 citation statements)
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“…Images were analyzed using custom-written MATLAB software (see Churgin et al 2019 (51) and Szuperak et al 2018 (5)). Temporally adjacent images were subtracted to generate maps of pixel value intensity change.…”
Section: Methodsmentioning
confidence: 99%
“…Images were analyzed using custom-written MATLAB software (see Churgin et al 2019 (51) and Szuperak et al 2018 (5)). Temporally adjacent images were subtracted to generate maps of pixel value intensity change.…”
Section: Methodsmentioning
confidence: 99%
“…Some animals may move just the nose while others may make dorso-ventral body bends resulting in translating the position of the worm ( Robinson et al 2019 ). Frame subtraction analysis, in which temporally adjacent video frames are digitally subtracted, has the advantage of higher throughput and of being fairly robust to lighting and animal contrast ( Raizen et al 2008 ; Zimmerman et al 2008 ; Donelson et al 2012 ; Nagy et al 2014 ; Huang et al 2017 ; Churgin et al 2019 ). However, as in the case nose tip tracking, frame subtraction analysis does not distinguish the type of movement the worm makes when active ( Robinson et al 2019 ).…”
Section: Methodological Considerationsmentioning
confidence: 99%
“…Experiments were carried out as previously described (32,74). Briefly, to collect developmentally synchronized second instar larvae, adult flies were placed in an embryo collection chamber, kept at 12:12 LD and 25°C, and allowed to lay eggs on a petri dish containing 3% agar, 2% sucrose, and 2.5% apple juice with yeast paste on top for 24 hours.…”
Section: Larval Rearing and Sleep Assaymentioning
confidence: 99%
“…Timelapse images were acquired every 6 s with the software IC Capture (The Imaging Source). Images were analyzed using custom-written MATLAB software (74). The first hour of data acquisition was discarded to allow acclimation.…”
Section: Larval Rearing and Sleep Assaymentioning
confidence: 99%