2007
DOI: 10.1074/mcp.t600063-mcp200
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Quantitative Glycomics of Human Whole Serum Glycoproteins Based on the Standardized Protocol for Liberating N-Glycans

Abstract: Global glycomics of human whole serum glycoproteins appears to be an innovative and comprehensive approach to identify surrogate non-invasive biomarkers for various diseases. Despite the fact that quantitative glycomics is premised on highly efficient and reproducible oligosaccharide liberation from human serum glycoproteins, it should be noted that there is no validated protocol for which deglycosylation efficiency is proven to be quantitative. To establish a standard procedure to evaluate N-glycan release fr… Show more

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Cited by 107 publications
(90 citation statements)
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“…In brief, IgG samples were reductively alkylated under the presence of detergent and then digested with trypsin and peptide N-glycosidase F (Roche Diagnostics, Penzberg, Germany) (43). The digested samples were mixed with a novel hydrazide-functionalized glycoblotting polymer (42), and sialic acids were methyl-esterified to render sialylated oligosaccharides chemically equivalent to neutral oligosaccharides (44).…”
Section: Analysis Of Oligosaccharide Structuresmentioning
confidence: 99%
“…In brief, IgG samples were reductively alkylated under the presence of detergent and then digested with trypsin and peptide N-glycosidase F (Roche Diagnostics, Penzberg, Germany) (43). The digested samples were mixed with a novel hydrazide-functionalized glycoblotting polymer (42), and sialic acids were methyl-esterified to render sialylated oligosaccharides chemically equivalent to neutral oligosaccharides (44).…”
Section: Analysis Of Oligosaccharide Structuresmentioning
confidence: 99%
“…50,51 Briefly, IgG samples were reductively alkylated under the presence of detergent, and then digested with trypsin and peptide N-glycosidase F (Roche Diagnostics, Penzberg, Germany). 52 The digested sample was mixed with a novel hydrazide-functionalized glycoblotting polymer 51 and after washing of the unbound substances, sialic acids were methyl-esterified to render sialylated oligosaccharides chemically equivalent to neutral oligosaccharides. 53 The IgG oligosaccharides were finally recovered as derivatives of aoWR (Na-((aminooxy)acetyl)tryptophanylarginine methyl ester), an oligosaccharide labeling reagent that allows highly sensitive detection on MS. 54 The recovered glycans were subjected to MALDI-TOF MS using an Ultraflex II mass spectrometer (Bruker Daltonik, Bremen, Germany) controlled by the FlexControl 2.0 software package.…”
Section: Analyses Of Oligosaccharide Structuresmentioning
confidence: 99%
“…In brief, IgG samples were reductively alkylated under the presence of detergent, then digested successively with trypsin and peptide N-glycosidase F (Roche Diagnostics), as previously described (19). The digested sample was mixed with a novel hydrazide-functionalized glycoblotting polymer (18) and, following washing of the unbound substances (e.g., peptides, detergent, enzymes), sialic acids were methyl-esterified to render sialylated oligosaccharides chemically equivalent to neutral oligosaccharides, as described (20).…”
Section: Analysis Of Oligosaccharide Structuresmentioning
confidence: 99%