A large number of mitochondrial proteins lack canonical mitochondrial-targeting signals. The bimodal transport of cytochromes P450 (CYPs) to endoplasmic reticulum and mitochondria (MT), reported previously by us, likely represents one mode of non-canonical protein targeting to MT. Herein, we have studied the mechanism of mouse MT-CYP1A1 targeting to gain insight into the regulatory features and evolutionary conservation of bimodal targeting mechanism. Mouse MT-CYP1A1 consists of two NH 2 -terminal-truncated molecular species, ؉91A1 and ؉331A1. Mutations Pro-2 3 Leu and Tyr-5 3 Leu, which increase the signal recognition particle ( Proteins targeted to mitochondria contain either NH 2 -terminal or internal signals, which include amphipathic ␣-helices, -sheet, and random structures with spaced positively charged residues (1-3). A majority of the NH 2 -terminally located mitochondrial-targeting signals are cleaved by the mitochondrial matrix metalloprotease following their import, although in a number of cases the signals remain uncleaved (1-4). Recent proteomic studies indicate that yeast mitochondria contain as many as 800 proteins while the rodent heart and liver mitochondria may contain well over 1500 proteins (5-8). It is estimated that Ͼ50% of mitochondria-associated proteins in both yeast and mammalian cells lack canonical MT 4 -targeting signals, and the precise mode of targeting of these proteins as well as mechanism of their translocation across the MT membranes remain unclear. The bimodal targeting of CYPs to ER and MT, Alzheimer amyloid precursor protein to plasma membrane and MT, and translocation of cytosolic Glutathione S-transferases to MT (9 -14) may represent one mode of targeting of noncanonical signal containing proteins to the MT compartment.Recent studies from our laboratory showed that different xenobiotic-inducible CYPs such as rat CYP1A1, CYP2E1, and CYP2B1 and others that are widely recognized as microsomal proteins (MC-CYPs) are also targeted to varying degrees to mitochondria (9 -11). These studies led to the concept of a new family of chimeric non-canonical-targeting signals, which function both as ER-targeting and MT-targeting signals, under different physiological conditions. We proposed that bimodal targeting of these CYP proteins is facilitated by the cryptic MTtargeting signal domain (residues 29 -40), located between the transmembrane helical domain (residues 1-30) and the Prorich domain (residues 39 -44) in various members of the CYP1, CYP2, and CYP3 families. We have also shown that the cryptic MT-targeting signals of different CYPs are activated by two distinct mechanisms: (a) endoproteolytic cleavage of the NH 2 -