2010
DOI: 10.1111/j.1365-313x.2009.04032.x
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Quantification and cluster analysis of actin cytoskeletal structures in plant cells: role of actin bundling in stomatal movement during diurnal cycles in Arabidopsis guard cells

Abstract: SUMMARYManual evaluation of cellular structures is a popular approach in cell biological studies. However, such approaches are laborious and are prone to error, especially when large quantities of image data need to be analyzed. Here, we introduce an image analysis framework that overcomes these limitations by semiautomatic quantification and clustering of cytoskeletal structures. In our framework, cytoskeletal orientation, bundling and density are quantified by measurement of newly-developed, robust metric pa… Show more

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Cited by 229 publications
(325 citation statements)
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References 34 publications
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“…A 30‐min dark treatment induced reorganisation of guard‐cell actin filaments into an irregular, mesh‐like arrangement in WT, whilst most actin filaments in opal5 guard cells remained bundled during the same treatment. To quantify the extent of actin filament bundling in guard cells, skewness was measured before and after dark treatments (Higaki et al ., 2010). The dark treatment caused a significant decrease in skewness in WT guard cells (Fig.…”
Section: Resultsmentioning
confidence: 99%
See 1 more Smart Citation
“…A 30‐min dark treatment induced reorganisation of guard‐cell actin filaments into an irregular, mesh‐like arrangement in WT, whilst most actin filaments in opal5 guard cells remained bundled during the same treatment. To quantify the extent of actin filament bundling in guard cells, skewness was measured before and after dark treatments (Higaki et al ., 2010). The dark treatment caused a significant decrease in skewness in WT guard cells (Fig.…”
Section: Resultsmentioning
confidence: 99%
“…Serial images were projected, and the skewness of the distribution of GFP‐fABD2 fluorescence intensity in the overlaid images was used as an indicator of the extent of filament bundling. Skewness was quantified using the I mage J software (http://rsb.info.nih.gov/ij/) as previously described (Higaki et al ., 2010). Images of 100 guard cells (50 stomata) per genotype or treatment were collected and analysed.…”
Section: Methodsmentioning
confidence: 99%
“…To do this, we focused on cell segments for which we had images of periclinal microtubules for at least seven time points prior to lobe initiation. The mean cortical occupancies (Higaki et al, 2010) of periclinal microtubules over time were calculated within opposing regions of interest (ROIs) in the two adjacent cells at the lobing interface. The ROIs were termed V, to denote the microtubule signals in the cell that would adopt a convex shape, and C, to denote the microtubule signals in the adjacent cell that would adopt a concave shape (Fig.…”
Section: Anticlinal Microtubules Are Not Stable Structures That Predimentioning
confidence: 99%
“…Together with its high and stable expression in epidermal cells of mature rosette leaves, we chose GFP-hTalin to study the organization of AFs in adf4 and ADF1-4Ri plants. We performed microscopic image analysis for the quantitative evaluation of AF bundling and density (Higaki et al, 2010b) in both uninfected (Supplemental Fig. S12) and G. orontii-infected (Fig.…”
Section: Af Organization Was Affected Only At Very Early Infection Timentioning
confidence: 99%