A yeast cDNA genetic library in a bacteriophage expression vector was screened using an antiserum reacting with fructose 1,6-bisphosphate aldolase from Saccharomyces cerevisiae. Radio-labelled probes of selected immunopositive clones were used for screening of a yeast genomic library. From the genomic clones a YeastlEscherichiu coli shuttle plasmid was constructed containing on a 1990-base-pair fragment the entire structural gene FBAI coding for yeast aldolase. The primary structure of the FBAI gene was determined. An open reading frame comprises 1077 base pairs coding for a protein of 359 amino acids with a predicted molecular mass of 39608 Da. As observed for other strongly expressed yeast genes, codon usage is extremely biased. The 810 base pairs at the 5' end and the 90 base pairs at the 3' end of the coding region of the cloned FBAI gene are sufficient for normal expression and show characteristic elements present in the noncoding sequences of other yeast genes. Aldolase is the major protein in yeast cells transformed with a high-copy-number plasmid containing the FBAI gene. The aldolase gene was disrupted by insertion of the yeast URA3 gene into the coding region of one FBAI allele in a homozygous diploid ura3 strain. The haploid offsprings with the defective aldolase alleleJhu1 : : URA3 lack aldolase enzymatic activity and fail to grow in media containing as a carbon source metabolites of only one side of the aldolase reaction.Aldolase (fructose 1,6-bisphosphate aldolase) catalyzes the reversible cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate and is present in all animal and plant tissues and most microorganisms [l]. Aldolases of higher organisms belong to class I, which is characterized by its molecular mechanism of cleavage of fructose 1,6-bisphosphate via a covalently linked imino-intermediate [I]. Many class I enzymes of various animals have been analyzed in great detail and DNA sequences of some aldolase genes have been reported recently (see [2] for pertinent references).In contrast to the aldolases in higher organisms, information about the molecular properties of the yeast enzyme is scarce. Richards and Rutter [3] reported the isolation of aldolase from Saccharomyces cerevisiue and identified the enzyme as a class I1 species: Native protein consists of two subunits of 40 kDa, each of which contains one tightly bound zinc cation essential for catalytic function [4].Several enzymes of the glycolytic pathway have been cloned and studied on a molecular basis in yeast [5]. However, very little is known about the aldolase reaction in the context of function and regulation of glycolysis and gluconeogenesis and about the interaction of aldolase with other glycolytic enzymes and with membranes (reviewed by Srere [6]). This prompted us to clone the structural gene of fructose 1,6-bisphosphate aldolase from S . cerevisiae in order to study its regulation of expression and the role of its gene product in the yeast glycolytic pathway in terms of enzyme clust...