Trehalose supports the growth of Thermus thermophilus strain HB27, but the absence of obvious genes for the hydrolysis of this disaccharide in the genome led us to search for enzymes for such a purpose. We expressed a putative ␣-glucosidase gene (TTC0107), characterized the recombinant enzyme, and found that the preferred substrate was ␣,␣-1,1-trehalose, a new feature among ␣-glucosidases. The enzyme could also hydrolyze the disaccharides kojibiose and sucrose (␣-1,2 linkage), nigerose and turanose (␣-1,3), leucrose (␣-1,5), isomaltose and palatinose (␣-1,6), and maltose (␣-1,4) to a lesser extent. Trehalose was not, however, a substrate for the highly homologous ␣-glucosidase from T. thermophilus strain GK24. The reciprocal replacement of a peptide containing eight amino acids in the ␣-glucosidases from strains HB27 (LGEHNLPP) and GK24 (EPTAYHTL) reduced the ability of the former to hydrolyze trehalose and provided trehalose-hydrolytic activity to the latter, showing that LGEHNLPP is necessary for trehalose recognition. Furthermore, disruption of the ␣-glucosidase gene significantly affected the growth of T. thermophilus HB27 in minimal medium supplemented with trehalose, isomaltose, sucrose, or palatinose, to a lesser extent with maltose, but not with cellobiose (not a substrate for the ␣-glucosidase), indicating that the ␣-glucosidase is important for the assimilation of those four disaccharides but that it is also implicated in maltose catabolism.␣-Glucosidases (EC 3.2.1.20) are a widespread group of enzymes that catalyze the hydrolysis of the ␣-glucosidic bond from the nonreducing end of a chain as well as the ␣-glucosidic bond of free disaccharides (21, 23). Many known ␣-glucosidases seem to prefer the ␣-1,4 bonds of maltose or maltooligosaccharides (21). However, the ␣-glucosidases from Thermus thermophilus strain GK24 and from Bacillus sp. strain SAM1606 preferentially hydrolyze the ␣-1,6 bond of isomaltose over other ␣ linkages (20,21,23). Trehalose is a natural disaccharide that is widespread in nature and that can serve multiple roles, namely, as a general stress protectant, a source of carbon and energy, a sensing and regulatory compound, and a structural element of the bacterial cell wall (11). The assimilation of trehalose as a carbon and energy source requires the activity of enzymes that hydrolyze the ␣-1,1 bond of this disaccharide, including trehalase (EC 3.2.1.28), trehalose phosphorylase (EC 2.4.1.64 and EC 2.4.1.231), and other ␣-glucosidases (EC 3.2.1.20) with broad specificity (14, 16). These enzymes may also play important roles in the regulation of the level of trehalose in a cell. Trehalose can also be converted into maltose by trehalose synthase (TreS; EC 5.4.99.16) and then metabolized via amylomaltase, maltose/maltodextrin phosphorylase, or other ␣-glucosidases with ␣-1,4-linkage hydrolytic activity (7,14,18). Although T. thermophilus HB27 lacks the genetic machinery for trehalose biosynthesis, this disaccharide is taken up from the medium (2, 24) but does not serve as a compatible s...