Here we report that ferricytochrome c (cyt c 3+ ) induces oxidation of hydroethidine (HE) and mitochondria-targeted hydroethidine (Mito-HE or MitoSOX ™ Red) forming highly characteristic homo-and heterodimeric products. Using a HPLC-electrochemical (EC) method, several products were detected from cyt c 3+ -catalyzed oxidation of HE and Mito-HE and characterized by mass spectrometry and NMR techniques as follows: homodimers (HE-HE, E + -E + ; Mito-HE-Mito-HE, Mito-E + -Mito-E + ) and heterodimers (HE-E + and Mito-HE-Mito-E + ), as well as the monomeric ethidium (E + ) and mito-ethidium (Mito-E + ). Similar products were detected when HE and Mito-HE were incubated with mitochondria. In contrast, mitochondria depleted of cyt c 3+ were much less effective in oxidizing HE or Mito-HE to corresponding dimeric products. Unlike E + or Mito-E + , the dimeric analogs (E + -E + and Mito-E + -Mito-E + ) were not fluorescent. Superoxide ( ) or Fremy's salt react with Mito-HE to form a product, 2-hydroxy-mito-ethidium (2-OH-Mito-E + ) that was detected by HPLC. We conclude that HPLC-EC but not the confocal and fluorescence microscopy is a viable technique for measuring superoxide and cyt c 3+ -dependent oxidation products of HE and Mito-HE in cells. Superoxide detection using HE and Mito-HE could be severely compromised due to their propensity to undergo oxidation.