“…However, in many other types of biological systems, like those describing hostpathogen interactions or inter-and intra-cellular dynamics, the identification of appropriate model scales may not be obvious and may need to be derived empirically based on some observables of the system. When the effects of scales are not well understood, there is a tendency in all systems to mechanistically model all those scales that may have a role in the system and use data available at those different scales to parametrize theoretical models and explore the implications of assumptions [16,35,42]. To inform these complex models, new methods of data collection and analysis [31,41] are needed to explain how different scales are connected and modelled.…”