Pseudomonas boanensis sp. nov., a bacterium isolated from river water used for household purposes in Boane District, Mozambique

Nicklasson, Matilda; Martín‐Rodríguez, Alberto J.; Thorell, Kaisa; Higdon, Shawn M; Neves, Luis; Mussagy, Aidate; Rydberg, Hanna; Hernroth, Bodil; Svensson-Stadler, Liselott; Sjöling, Åsa

doi:10.1099/ijsem.0.005461

Cited by 9 publications

(3 citation statements)

References 14 publications

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“…Sm006 T (Table 1). The data for the latter five strains were retrieved from Yamada et al [30], Nicklasson et al [31], Thorat et al [32], Kimura et al [33] and Anurat et al [34] for comparison. Sm006 T was cultured routinely at 27 °C on standard methods agar (plate count agar) plates (Nissui) and tested for the phenotypic characteristics, as described below.…”

Section: Continuedmentioning

confidence: 99%

“…Characteristics that differentiate Pseudomonas solani sp. nov. strain Sm006 T from the type strains of the most closely related species of the genus Pseudomonas Strains: 1, Pseudomonas solani Sm006 T ; 2, Pseudomonas tohonis TUM18999 T (data from[30]); 3, Pseudomonas otitidis CCUG 55592 T[31]; 4, Pseudomonas furukawaii KF707 T[32][33][34]; 5, Pseudomonas lalkuanensis PE08 T[32]; 6, Pseudomonas resinovorans DSM 21078 T[32].Characteristics have been scored as follows: +, positive reaction; −, negative reaction; w, weakly positive reaction; na, not available.…”

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confidence: 99%

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Pseudomonas solani sp. nov. isolated from the rhizosphere of eggplant in Japan

Sawada

Takeuchi

Someya³

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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The search for bacteria that can be used as biocontrol agents to control crop diseases yielded a promising candidate, Sm006T, which was isolated from the rhizosphere of eggplant (Solanum melongena) growing in a field in Aichi Prefecture, Japan, in 2006. The cells were Gram-stain-negative, aerobic, non-spore-forming, rod-shaped and motile with one polar flagellum. The results of homology searches and phylogenetic analyses based on the 16S rRNA gene sequence indicated that Sm006T represents a member of the genus Pseudomonas . The genomic DNA G+C content was 66.3 mol% and the major cellular fatty acids (more than 5 % of the total fatty acids) were summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C16 : 0 and C12 : 0. Phylogenetic analyses using the rpoD gene sequence and phylogenomic analysis of the whole genome sequence revealed that Sm006T represents a member of the Pseudomonas resinovorans group; however, its phylogenetic position does not match that of any known species of the genus Pseudomonas . The average nucleotide identity and digital DNA–DNA hybridisation values between the strain and closely related species were lower than the thresholds for prokaryotic species delineation (95–96 and 70 %, respectively), with the highest values observed for Pseudomonas tohonis TUM18999T (92.05 and 46.3 %, respectively). Phenotypic characteristics, cellular fatty acid composition and possession of 2,4-diacetylphloroglucinol biosynthetic gene cluster could be used to differentiate the strain from its closest relatives. The phenotypic, chemotaxonomic and genotypic data obtained during this study indicated that Sm006T represents a novel species of the genus Pseudomonas , for which we propose the name Pseudomonas solani sp. nov., with Sm006T (= MAFF 212523T = ICMP 24689T) as the type strain.

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Section: Continuedmentioning

confidence: 99%

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confidence: 99%

Pseudomonas solani sp. nov. isolated from the rhizosphere of eggplant in Japan

Sawada

Takeuchi

Someya³

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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“…The genus Pseudomonas , belonging to the family Pseudomonadaceae , was first proposed by Migula [13]. Pseudomonas can be found in various environments such as soil [14], rivers [15], humans [16] and hydrocarbon-contaminated environments [16]. According to the List of Prokaryotic Names with Standing in Nomenclature (https://lpsn.dsmz.de/genus/pseudomonas), the genus Pseudomonas comprises 313 species with validly published names.…”

Section: Introductionmentioning

confidence: 99%

Pseudomonas aestuarii sp. nov., isolated from tidal flat sediment

Kim,

Suh,

Kim

et al. 2023

International Journal of Systematic and Evolutionary Microbiology

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Two novel Pseudomonas strains, SA3-5T and SA3-6, were isolated from a tidal flat (getbol) in the Republic of Korea. Strains SA3-5T and SA3-6 were subjected to polyphasic characterization to determine their taxonomic affiliations. Cells were Gram-stain-negative, aerobic, rod-shaped and motile by using peritrichous flagella. Based on their 16S rRNA gene sequences, strains SA3-5T and SA3-6 exhibited a high degree of similarity (100 %) and were classified within the genus Pseudomonas . Furthermore, the closest related species to SA3-5T and SA3-6 were Pseudomonas taeanensis MS-3T (98.3 %). The ranges of average nucleotide identity and digital DNA–DNA hybridization values between SA3-5T and closely related species were 75.9–89.1% and 21.3–38.7%, respectively, both of which being below the thresholds for delineating novel strains. Strain SA3-5T and SA3-6 contained C16 : 1 ω6с and/or C16 : 1 ω7с (summed feature 3), C16 : 0 and C18 : 1 ω6с and/or C18 : 1 ω7с (summed feature 8) as the major fatty acids. The predominant respiratory quinone was Q-9. The DNA G+C content of strain SA3-5T was 62.5 mol%. Based on their combined phenotypic, chemotaxonomic and phylogenetic characterisitics, strains SA3-5T and SA3-6 represent a novel species of the genus Pseudomonas for which the name Pseudomonas aestuarii sp. nov. is proposed. The type strain is SA3-5T (=KCTC 92395T=JCM 35697T).

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