“…Comparison between baseline_control and follow-up_case to baseline_case reveals that samples from baseline_case likely have enrichment of pathways related to bacteria, some even exclusive to the phylum Pseudomonadota. The members of this phylum are known to be pathogens of the respiratory tract ( Achromobacter, Klebsiella, Pseudomonas, Sternotrophomonas ), gastrointestinal tract ( Aeromonas, Campylobacter, Escherichia, Helicobacter ), and blood ( Brevundimonas, Neisseria, Serratia, Stenotrophomonas ), among other conditions ( Citrobacter, Enterobacter, Haemophilus, Proteus ) ( Leão et al, 2023 ). This implies that the activity of pathogenic bacteria was high in the baseline case.…”