Native antithrombin (AT) has an inactive reactive site loop conformation unless it is activated by a unique pentasaccharide fragment of heparin (H 5 ). Structural data suggests that this may be due to preinsertion of two N-terminal residues of the reactive site loop of the serpin into the A--sheet of the molecule. Relative to ␣ 1 -antitrypsin, the reactive site loop of AT has three additional residues, Arg 399 , Val 400 , and Thr 401 , at the C-terminal P end of the loop. To determine whether a longer reactive site loop of AT is responsible for loop preinsertion in the native conformation, mutants of the serpin were expressed in which these residues were individually or in combination deleted. Kinetic analysis suggested that deletion of two residues, Val 400 and Thr 401 , changed the solution equilibrium of the serpin in favor of the active conformation, thereby enhancing the inhibition of factor Xa by an order of magnitude independent of H 5 . Interestingly, the reactivity of this mutant with thrombin was impaired by the same order of magnitude in the absence, but not in the presence of H 5 . These results suggest that a longer reactive site loop in AT is responsible for its inactive native conformation toward factor Xa, while at same time AT requires this feature to regulate the activity of thrombin.
Antithrombin (AT)1 is the primary serpin inhibitor in plasma that regulates the activities of the serine proteinases of both the intrinsic and extrinsic pathways of the blood coagulation cascade (1-3). Similar to other inhibitory serpins, AT inhibits its target proteinases by binding to their active sites through an exposed reactive center loop and undergoing a conformational change which traps the enzymes in inactive, stable complexes (4, 5). Unlike most other inhibitory serpins, however, AT has a reactive site loop that has an inactive conformation (6 -9).A unique high affinity pentasaccharide (H 5 ) fragment of heparin can bind and allosterically activate AT to promote its reactivity with factor Xa (fXa) by several hundred-fold (6,10). Surprisingly, however, the allosteric activation of AT by H 5 has no effect on the reactivity of the serpin with thrombin. In this case, longer chain heparins containing H 5 plus at least 13 additional saccharides are required to efficiently accelerate the inhibition reaction by an alternative ternary complex bridging or template mechanism (11, 12). The molecular basis for differential reactivity of fXa and thrombin with the activated conformation of AT is not known.Structural data suggest that the inactive native conformation of the reactive site loop of AT is caused by preinsertion of two N-terminal P14 and P15 (nomenclature of Schechter and Berger (13)) residues of the loop into the A--sheet of the serpin and that the binding of the cofactor to AT causes the expulsion of this inserted region and, thereby, activation of the serpin (6,8,14,15). The structural feature(s) in the reactive site loop of the serpin that may be responsible for preinsertion of the two N-terminal resid...