2015
DOI: 10.1016/j.cbi.2015.06.020
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Proteomic profile of aminoglutethimide-induced apoptosis in HL-60 cells: Role of myeloperoxidase and arylamine free radicals

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Cited by 25 publications
(12 citation statements)
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“…Each lane on the gel was excised into 12 equal pieces after being de-stained using 100 mM NH 4 HCO 3 /acetonitrile (50:50). Each gel piece was subjected to in-gel tryptic digestion as previously described 22 . The final extracted peptides from the gel were suspended in 5% acetonitrile and 1% formic acid then analyzed on an LTQ Oribitrap XL, with the resulting data being searched against the Rattus norvegicus protein database using Proteome Discoverer 1.3 as previously described 23 .…”
Section: Methodsmentioning
confidence: 99%
“…Each lane on the gel was excised into 12 equal pieces after being de-stained using 100 mM NH 4 HCO 3 /acetonitrile (50:50). Each gel piece was subjected to in-gel tryptic digestion as previously described 22 . The final extracted peptides from the gel were suspended in 5% acetonitrile and 1% formic acid then analyzed on an LTQ Oribitrap XL, with the resulting data being searched against the Rattus norvegicus protein database using Proteome Discoverer 1.3 as previously described 23 .…”
Section: Methodsmentioning
confidence: 99%
“…Each lane was subsequently cut into 15 equal bands, with each band corresponding to a region of the gel containing proteins of a distinct molecular weight range. Each of the gel fractions was subjected to in‐gel tryptic digestion as previously described ; the resulting extracted peptides were then dried and suspended in 60 μL of 0.2% formic acid in 5% ACN.…”
Section: Methodsmentioning
confidence: 99%
“…In-gel digestion was conducted by using trypsin (6 ng/uL) overnight (~16 h). Two steps extraction procedure was then carried out to extract the tryptic peptides from the gel (step-1: extraction by 97% water/2% acetonitrile/1% formic acid solution; step-2: extraction by 1:1 extraction buffer and acetonitrile) [1] , [3] .…”
Section: Experimental Design Materials and Methodsmentioning
confidence: 99%
“…A precursor mass tolerance of 10 ppm and a fragment mass tolerance of 0.8 Da were used as search parameters. Peptides were searched with carbamidomethyl cysteine as a static modification and oxidized methionine, 13 C-lysine and 13 C-arginine as dynamic modifications [1] , [3] .…”
Section: Experimental Design Materials and Methodsmentioning
confidence: 99%