Proteome Response of a Metabolically Flexible Anoxygenic Phototroph to Fe(II) Oxidation

Abstract

The oxidation of Fe(II) by anoxygenic photosynthetic bacteria was likely a key contributor to Earth's biosphere prior to the evolution of oxygenic photosynthesis and is still found in a diverse range of modern environments. All known phototrophic Fe(II) oxidizers can utilize a wide range of substrates, thus making them very metabolically flexible. However, the underlying adaptations required to oxidize Fe(II), a potential stressor, are not completely understood. We used a combination of quantitative proteomics and cryogenic transmission electron microscopy (cryo-TEM) to compare cells of TIE-1 grown photoautotrophically with Fe(II) or H and photoheterotrophically with acetate. We observed unique proteome profiles for each condition, with differences primarily driven by carbon source. However, these differences were not related to carbon fixation but to growth and light harvesting processes, such as pigment synthesis. Cryo-TEM showed stunted development of photosynthetic membranes in photoautotrophic cultures. Growth on Fe(II) was characterized by a response typical of iron homeostasis, which included an increased abundance of proteins required for metal efflux (particularly copper) and decreased abundance of iron import proteins, including siderophore receptors, with no evidence of further stressors, such as oxidative damage. This study suggests that the main challenge facing anoxygenic phototrophic Fe(II) oxidizers comes from growth limitations imposed by autotrophy, and, once this challenge is overcome, iron stress can be mitigated using iron management mechanisms common to diverse bacteria (e.g., by control of iron influx and efflux). The cycling of iron between redox states leads to the precipitation and dissolution of minerals, which can in turn impact other major biogeochemical cycles, such as those of carbon, nitrogen, phosphorus and sulfur. Anoxygenic phototrophs are one of the few drivers of Fe(II) oxidation in anoxic environments and are thought to contribute significantly to iron cycling in both modern and ancient environments. These organisms thrive at high Fe(II) concentrations, yet the adaptations required to tolerate the stresses associated with this are unclear. Despite the general consensus that high Fe(II) concentrations pose numerous stresses on these organisms, our study of the large-scale proteome response of a model anoxygenic phototroph to Fe(II) oxidation demonstrates that common iron homeostasis strategies are adequate to manage this. The bulk of the proteome response is not driven by adaptations to Fe(II) stress but to adaptations required to utilize an inorganic carbon source. Such a global overview of the adaptation of these organisms to Fe(II) oxidation provides valuable insights into the physiology of these biogeochemically important organisms and suggests that Fe(II) oxidation may not pose as many challenges to anoxygenic phototrophs as previously thought.

Iron oxidation is regulated by the two-component system, RegSR, and plays a role in photolithoheterotrophic growth in Rhodopseudomonas palustris

“…Expression of pioABC is a poor marker for anoxygenic phototrophic Fe(II) oxidation in the environment since expression of pioABC occurs under photoheterotrophic conditions and photoautotrophic conditions with H2 and thiosulfate (36,49). It was proposed that pioABC expression could be a marker for photoautotrophic conditions since high levels of expression were only observed under photoautotrophic conditions when compared to photoheterotrophic growth with acetate (49). However, we found that expression of pioABC under photoheterotrophic conditions is dependent on the oxidation state of the carbon source provided and whether cells are carrying out nitrogen fixation.…”

Bio-imaging with the helium-ion microscope: A review

“…However, the combination of soft biological material with hard minerals brings unique challenges to imaging these interactions at nanoscale resolution. Traditionally, scanning electron or transmission electron microscopy techniques have been applied to great effect to study many aspects of microbe-mineral interactions, such as the formation of intra-or extracellular mineral precipitates, or intracellular organelles associated with energy gain or electron transfer [92]. However, over recent years, the number of articles related to geomicrobiology and containing HIM data has increased.…”