Amino acid sequence analysis of the 67,000-dalton fragment that is the amino-terminal half of human ceruloplasmin has revealed internal triplication in the primary structure of the entire molecule. This is illustrated by comparison of 620 residues representing homologous domains of the 67-kDal fragment and of the 50-kDal and 19-kDal fragments that together comprise the carboxyl-terminal half of the molecule. The polypeptide chain is divided into three covalently linked homologous segments, each of about 340 residues. All three homology units have about 30% identity in sequence, and each pair exhibits at least 40% identity. The statistical significance of the 3-fold internal duplication was established by computerized analysis of the sequence. These results and studies of the sites of limited proteolytic cleavage support a model for the ceruloplasmin molecule consisting of an alternating structure of six domains of two different kinds (or possibly nine domains of three kinds). The 3-fold internal homology suggests that the ceruloplasmin molecule evolved by tandem triplication of ancestral genes.Ceruloplasmin [Cp; ferroxidase; iron(II):oxygen oxidoreductase, EC 1.16.3.1] is a blue a2-glycoprotein that binds 90-95% of blood plasma copper and has multiple functions (1). Although subject to spontaneous proteolysis, it consists of a single polypeptide chain (MAr 135,000) that exhibits internal duplication in amino acid sequence (2). Three types ofobservations suggest that the ceruloplasmin molecule may be divided into a series of homologous domains: (i) the internal homology in primary structure (2); (ii) the existence of sites of limited proteolytic cleavage resulting in a series of fragments, the principal ones having approximate molecular weights of 67,000, 50,000, and 19,000 (3-8); and (iii) the presence of six copper atoms of three different kinds, as distinguished by spectroscopic and other physical properties (9, 10).We have reported the complete amino acid sequence of the 19,000-dalton (19-kDal) (5, 6) and the 50,000-dalton (50-kDal) (3) fragments that together account approximately for the carboxyl-terminal half of the ceruloplasmin molecule. By comparison of these, we have shown the existence of two homology regions, each containing 224 residues (2). We have now almost completed determining the amino acid sequence ofthe 67,000-dalton (67-kDal) fragment that is the amino-terminal halfof the molecule. The polypeptide chain consists of three covalently linked homologous segments (homology units), each of about 340 amino acid residues. The entire molecule exhibits a 3-fold internal homology in amino acid sequence, all three homology units having about 30% identity in sequence. This is illustrated here by comparing the sequences of some 620 residues from sections of the 67-kDal and 50-kDal fragments and the entire 19-kDal fragment. On the basis ofthese results and from studies of the sites of limited proteolytic cleavage and the location of the four oligosaccharides, we propose a tentative model for the...