The structure of the chicken link protein gene has been determined from a series of genomic clones that cover the entire coding region as well as the complete 3'-untranslated region and a small portion of the 5'-untranslated region. The gene is >80 kilobase pairs long and is present in a single copy in the chicken genome. The link protein gene contains at least five exons with four encoding the entire protein. We have reported (3) the isolation of cDNA clones encoding the entire chicken cartilage link protein (LP) and deduced the amino acid sequence from the nucleotide sequence. A comparison between the complete amino acid sequence of rat LP (4) and chicken LP (3) shows a very high degree of homology. The analysis of the amino acid sequence of LPs reveals that the protein can be divided into several domains. The N-terminal half of LP has homology with the repeating units of the human free secretory component, the 'y chain of the T-cell receptor, and three types of immunoglobulin variable regions (5). The C-terminal half contains tandemly repeated sequences that may be the hyaluronic acid binding regions of LP (3,4,6).Here we report on the isolation of chicken LP genomic clones covering the entire protein coding region as well as the complete 3'-untranslated region of the mRNA. The structure of the gene is compared to the domain structure of the protein.
MATERIALS AND METHODSConstruction and Screening of the Chicken Genomic Library. High molecular weight DNA, isolated from 9-day chicken embryos, was partially digested with Sau3AI and inserted into the BamHI site of XEMBL3 vector DNA as described by Frischauf et al. (7). Ligation mixtures were packaged in vitro, and 0.5-1 x 106 recombinant phages were amplified in Q359 host cells.The library was screened according to the method of Benton and Davis (8) using '2P-labeled LP cDNA probes (3). Duplicate filters were hybridized as described by Maniatis et al. (9). Phage DNA was isolated (10), and restriction maps were established based on the results of single and double digests of phage DNA. Restriction fragments were subcloned in pUC8/pUC9 (11) or in M13mp8/Ml3mp9 (12). These genomic fragments as well as different LP cDNA fragments were used as probes in Southern hybridizations (13) to confirm the restriction map.DNA fragments were labeled with 32P by random oligonucleotide priming (14). Hybridization and washing conditions of Southern blots of restriction digests of genomic DNA were carried out according to Jeffreys and Flavell (15).Electron Microscopy. Separated complementary DNA strands of genomic clones were isolated from agarose gels as described (16). Double heteroduplexes were prepared by incubating the complementary DNA strands of appropriate phages with 3-5 ,ug of chicken sternal total RNA in 80% (vol/vol) formamide and 0.1 M Hepes (pH 8.3), 0.4 M NaCl, 0.01 M EDTA (17) in a final volume of 25 ,ul at a DNA concentration of 5 uzg/ml. Incubation was done for 15 hr at 45°C. Excess RNA was removed by chromatography on a Sephacryl S-1000 column (2 x 45 mm...