2010
DOI: 10.1093/nar/gkq522
|View full text |Cite
|
Sign up to set email alerts
|

ProteinDBS v2.0: a web server for global and local protein structure search

Abstract: ProteinDBS v2.0 is a web server designed for efficient and accurate comparisons and searches of structurally similar proteins from a large-scale database. It provides two comparison methods, global-to-global and local-to-local, to facilitate the searches of protein structures or substructures. ProteinDBS v2.0 applies advanced feature extraction algorithms and scalable indexing techniques to achieve a high-running speed while preserving reasonably high precision of structural comparison. The experimental result… Show more

Help me understand this report

Search citation statements

Order By: Relevance

Paper Sections

Select...
1
1

Citation Types

0
3
0

Year Published

2015
2015
2015
2015

Publication Types

Select...
2

Relationship

0
2

Authors

Journals

citations
Cited by 2 publications
(3 citation statements)
references
References 20 publications
0
3
0
Order By: Relevance
“…While there have been great advances in predicting protein structure from primary sequence (see later), the prediction of function from structure (let alone sequence) remains an important (if largely unattained) aim. [40][41][42][43][44][45][46][47][48][49][50][51][52][53][54] How much of sequence space is 'functional'?…”
Section: The Nature Of Sequence Spacementioning
confidence: 99%
“…While there have been great advances in predicting protein structure from primary sequence (see later), the prediction of function from structure (let alone sequence) remains an important (if largely unattained) aim. [40][41][42][43][44][45][46][47][48][49][50][51][52][53][54] How much of sequence space is 'functional'?…”
Section: The Nature Of Sequence Spacementioning
confidence: 99%
“…Since direct comparison through experiments are not possible, we here make an effort to do an indirect comparison as follows. While presenting ProteinDBS in 15 the authors have claimed that it is 10.87 times faster than CE. Now, as has been reported in 21 , MASASW is more accurate and much more faster than CE.…”
Section: Discussionmentioning
confidence: 99%
“…The technique used in 14 has some similarities with our work which will be discussed in a later section. Subsequently, a second and enhanced version of the system called ProteinDBS v2.0 has been developed which is reported in 15 . ProteinDBS v2.0 incorporates the global comparison method using the knowledge-based feature extraction and online database indexing method of 16 and the local comparison method of 17 .…”
mentioning
confidence: 99%