The essential yeast gene MPI1 encodes a mitochondrial membrane protein that is possibly involved in protein import into the organelle (A. C. Maarse, J. Blom, L. A. Grivell, and M. Meijer, EMBO J. 11:3619-3628, 1992). For this report, we determined the submitochondrial location of the MPI1 gene product and investigated whether it plays a direct role in the translocation of preproteins. By fractionation of mitochondria, the mature protein of 44 kDa was localized to the mitochondrial inner membrane and therefore termed MIM44. Import of the precursor of MIM44 required a membrane potential across the inner membrane and involved proteolytic processing of the precursor. A preprotein in transit across the mitochondrial membranes was cross-linked to MIM44, whereas preproteins arrested on the mitochondrial surface or fully imported proteins were not cross-linked. When preproteins were arrested at two distinct stages of translocation across the inner membrane, only preproteins at an early stage of translocation could be cross-linked to MIM44. Moreover, solubilized MIM44 was found to interact with in vitro-synthesized preproteins. We conclude that MIM44 is a component of the mitochondrial inner membrane import machinery and interacts with preproteins in an early step of translocation.Only six essential genes encoding mitochondrial proteins are known in Saccharomyces cerevisiae. The products of four of these genes are located in the mitochondrial matrix: the two heat shock proteins hsp70 (6, 17) and hsp60 (5,22,35), and the two components of the mitochondrial processing peptidase (16,30,48,49). ISP42, also termed MOM38, is located in the outer membrane and forms an essential part of the mitochondrial receptor complex that is responsible for the specific recognition and translocation of preproteins (2,18,20,41,43). All of the components mentioned were found to play a crucial role in the import pathways of cytosolically synthesized preproteins.The sixth essential mitochondrial protein, encoded by MPH, has also been implicated to be involved in import of preproteins (19). The gene MPh was identified by its ability to rescue the genetic defect of a mutant impaired in mitochondrial protein import. The gene product was localized to the mitochondrial membranes by using a modified protein carrying an epitope tag. It was proposed that the protein was synthesized with an amino-terminal presequence and thus located in the inner membrane (19). The identification and characterization of the inner membrane transport machinery is currently a major goal in the analysis of mitochondrial protein import. A demonstration that the MPI1 gene product is located in the inner membrane and directly participates in the import of preproteins would be an important first step toward this goal.Here we show that the MPh gene product indeed represents a genuine component of the mitochondrial inner membrane import machinery (MIM) (27). The protein was local-* Corresponding author.ized to the inner membrane and termed MIM44. By a cross-link approach with dis...