Amyotrophic lateral sclerosis (ALS), a systems neurodegeneration of adults, is typically progressive, fatal, and arises from death of lower and upper motorneurons (MN's). We carried out RNA sequencing (RNA-seq) from cervical spinal cord MN's isolated with laser capture microdissection (LCM) from ALS (n=4) and CTL (n=6) subjects. Cufflinks estimation of FPKM values (fragments per kilobase of exon per million reads), identified 3868 genes where the minimal mean FPKM was 2.0 in both groups. "Biologically blind" plots showed gene expression in ALS MN's was increased 2 to 7-fold compared to CTL MN gene expression.