Thrombomodulin (TM), or its epidermal growth factor-like domains 456 (TM456), enhances the catalytic efficiency of thrombin toward both protein C and protein C inhibitor (PCI) by 2-3 orders of magnitude. Structural and mutagenesis data have indicated that the interaction of basic residues of the heparin-binding exosite of protein C with the acidic residues of TM4 is partially responsible for the efficient activation of the substrate by the thrombin-TM456 complex. Similar to protein C, PCI has a basic exosite (H-helix) that constitutes the heparin-binding site of the serpin. To determine whether TM accelerates the reactivity of thrombin with PCI by providing a binding site for the H-helix of the serpin, an antithrombin (AT) mutant was constructed in which the H-helix of the serpin was replaced with the same region of PCI (AT-PCI H-helix ). Unlike PCI, the Hhelix of AT is negatively charged. It was discovered that TM456 slightly (<2-fold) impaired the reactivity of AT with thrombin; however, it enhanced the reactivity of AT-PCI H-helix with the protease by an order of magnitude. Further studies revealed that the substitution of Arg 35 of thrombin with an Ala also resulted in an order of magnitude enhancement in reactivity of the protease with both PCI and AT-PCI H-helix independent of TM. We conclude that TM enhances the reactivity of PCI with thrombin by providing both a binding site for the serpin and a conformational modulation of the extended binding pocket of thrombin.
Protein C inhibitor (PCI)1 is an inhibitor of the serpin superfamily that can react with most coagulation proteases in plasma (1-4). It has been named PCI because it was initially thought that its main target in plasma is activated protein C. However, several years ago we demonstrated that the main plasma target protease for PCI is the thrombin-thrombomodulin (TM) complex (5). This was evidenced by the observation that TM enhanced the reactivity of thrombin with PCI by two orders of magnitude. The cofactor effect of TM in promoting the reactivity of PCI with thrombin was because of protein-protein interactions, because the epidermal growth factor-like domains 456 (TM456) of the cofactor, which is devoid of the heparin-like chondroitin sulfate moiety accelerated the reaction to a similar extent (5). TM456 is the minimal functional fragment of the cofactor that is capable of switching the specificity of thrombin from a procoagulant to an anticoagulant enzyme (6, 7). TM456 binds to exosite-1 of thrombin and competitively inhibits the binding of procoagulant ligands such as fibrinogen, PAR1, and procofactors V and VIII to this site of thrombin (8 -13). Moreover, TM456 dramatically improves the catalytic efficiency of thrombin toward protein C, thereby initiating the anticoagulant pathway by rapidly activating the substrate to activated protein C (6). Activated protein C down-regulates the coagulation cascade by degrading both factors Va and VIIIa by limited proteolysis (14). Paradoxically, TM also improves the catalytic efficiency of thrombin towar...