The high-surety power supply system, Super Uninterruptable Power Supply (Super-UPS), is an evolution of the traditional UPS. It consists of multiple sources, multiple energy storages and redundant power converters to improve the reliability of the power supply system significantly. In this paper, a fast fault protection scheme based on direction of fault current without the assistance of communication for Super-UPS is presented. It achieves fast and selective fault detection and ensures the uninterruptible load power when short-circuit faults occur. The directional fault current detection and the coordination between the circuit breakers and converters are investigated. The protection threshold setting are also discussed. In addition, an improved fault current measurement method, which can suppress the influence of stray inductance of the solid state circuit breaker, is presented to guarantee an accurate operation of the protection scheme for rapidly rising fault current. Finally, the proposed protection scheme and the improved fault current measurement method for Super-UPS are verified by experiments.