2. Is it all necessary or can some of it be deleted as 'off topic' (examples)?As mentioned above it would be important to follow VSMC calcification rather than a mixture of very different disease entities. I still believe that media sclerosis and arteriosclerosis are very different diseases.
Authors' response:We thank the reviewer for highlighting this point. We agree with the reviewer that media sclerosis and arteriosclerosis are very different diseases, although they may share some similar common mechanisms. As described above, we have removed the text in section 3.1, section 4.1 and the entire section 4.4 to focus our manuscript on vascular medial calcification.
Is it comprehensive or have they missed citing anything important (examples)?It should be clearly stated that there are mTOR dependent and independent ways of inducing autophagy. The Review would benefit to show differences and overlaps of apoptosis, necrosis, necroptosis and autophagy.Authors' response: We thank the reviewer for consideration of this point. We have stated both the TOR dependent and independent autophagy pathways under section 2-The key regulators of autophagy. Under the same section we have also added text on cell death and autophagic cell death and its crosstalk with apoptosis. As commented by reviewer 2, it is not mTOR in yeast, but TOR. We have revised this term accordingly. The additional text has been added as below (Page 7, line 14-23). Furthermore, autophagy pathway could also be regulated by TOR independent pathways like inositol signalling pathways (Sarkar, et al., 2005), Ca 2+ /calpain pathway (Williams, et al., 2008), cAMP pathway (Williams, et al., 2008) etc. It is also interesting to note that autophagy pathway, which is mainly a cellular degradation pathway is intimately linked to cell death and is different from other programmed cell death mechanisms like apoptosis, necrosis and necroptosis. Autophagy cell death is often seen associated with increased number of autophagosomes inside the cell (Yonekawa & Thorburn, 2013). However, there is a complex crosstalk between autophagy and apoptosis where the calpain-mediated cleavage of Atg5 can trigger cell death by apoptosis (Yousefi, et al., 2006). In this review we have only focused on autophagy as a cytoprotective pathway.Reviewer 2 however selective autophagy can degrade specific substrates like mitochondria (