15Reduction of parasite diversity in modern human populations is suspected to be a primary cause 16 for the increase of autoimmune disorders. However, the long-term evolutionary consequences of 17 decreased parasite diversity on the host immune system are not well understood. We used the 18 cavefish Astyanax mexicanus to understand how loss of biodiversity, a hallmark of cave 19 adaptation, influences the evolutionary trajectory of the vertebrate host immune system by 20 comparing river with cave morphotypes. We show that cavefish display a more sensitive 21 proinflammatory immune response towards bacterial endotoxins, which is characteristic in other 22 93 inflammatory cytokines, interleukin-1beta (il-1β), tumor necrosis factor alpha (tnf-α), interleukin-6 (il-6) and granulocyte 94 colony stimulating factor (g-csf), of HK cells from surface and cavefish after incubation with (b) 20 µg/mL 95 lipopolysaccharide (LPS) or (c) 0.2 µg/mL LPS relative to HK cells incubated without LPS. Plotted is the mean of three 96 independent experiments with standard error (SE) (d) RT-qPCR analysis of proinflammatory cytokines il-1β & tnf-α 97 after intraperitoneal injection of LPS in vivo (20 µg/ g (bodyweight fish)). N=5 and 4 for surface fish and cavefish, 98 respectively. (e) RT-qPCR based expression analysis of proinflammatory cytokines il-1β, tnf-α, il-6, g-csf of cavefish 99 relative to surface fish of control samples across all timepoints as shown in (b) and (c) (n=18). Significance values were 100 determined by a pairwise fixed reallocation randomization test using REST2009 software [18]. (f) Representative 101 6 contour plot of HK cells from three surface A. mexicanus after FACS analysis using scatter characteristics showing 99102 % of all events. 4 different population (erythrocytes, myelomonocytes, progenitors and lymphocytes & progenitors) 103 were identified and sorted for May-Grünwald Giemsa staining. Images of representative cells that were found in each 104 population are shown for each population and identified based on similar approaches in zebrafish [17, 19] as (i) mature 105 erythrocytes, (ii) promyelocytes, (iii) eosinophiles, (iv) neutrophiles, (v) monocytes, (vi) macrophages, (vii) erythroblasts, 106 (viii) myeloblasts, (ix) erythroid progenitors, (x) lymphocytes and (xi) undifferentiated progenitors. Scale bar is 10 µm. 107 (g) Box plots of relative abundances of HK cells from surface and cavefish within the 4 population as defined by scatter 108 characteristics in (f) for six independent replicates for surface and cavefish respectively. Significances were determined 109 by one-way ANOVA and subsequent FDR. (h) Box plot representation of myelomonocyte / lymphocyte (M / L) ratio 110 from surface, surface x cavefish F1 hybrids and cavefish (n=6 for each). (i) Box plot presentation of relative phagocytic 111 rate of HK cells from surface fish and cavefish incubated with Alexa-488 coupled Staphylococcus aureus. To control 112 for passive uptake of Alexa-488 coupled S. aureus, a control sample was incubated...