Proof that Burkholderia Strains Form Effective Symbioses with Legumes: a Study of Novel Mimosa -Nodulating Strains from South America

Abstract

Twenty Mimosa-nodulating bacterial strains from Brazil and Venezuela, together with eight reference Mimosa-nodulating rhizobial strains and two other ␤-rhizobial strains, were examined by amplified rRNA gene restriction analysis. They fell into 16 patterns and formed a single cluster together with the known ␤-rhizobia, Burkholderia caribensis, Burkholderia phymatum, and Burkholderia tuberum. The 16S rRNA gene sequences of 15 of the 20 strains were determined, and all were shown to belong to the genus Burkholderia; four distinct clusters could be discerned, with strains isolated from the same host species usually clustering very closely. Five of the strains (MAP3-5, Br3407, Br3454, Br3461, and Br3469) were selected for further studies of the symbiosisrelated genes nodA, the NodD-dependent regulatory consensus sequences (nod box), and nifH. The nodA and nifH sequences were very close to each other and to those of B. phymatum STM815, B. caribensis TJ182, and Cupriavidus taiwanensis LMG19424 but were relatively distant from those of B. tuberum STM678. In addition to nodulating their original hosts, all five strains could also nodulate other Mimosa spp., and all produced nodules on Mimosa pudica that had nitrogenase (acetylene reduction) activities and structures typical of effective N 2 -fixing symbioses. Finally, both wild-type and green fluorescent protein-expressing transconjugant strains of Br3461 and MAP3-5 produced N 2 -fixing nodules on their original hosts, Mimosa bimucronata (Br3461) and Mimosa pigra (MAP3-5), and hence this confirms strongly that Burkholderia strains can form effective symbioses with legumes.Although it was generally accepted for many years that legumes (and the nonleguminous plant Parasponia) were nodulated exclusively by members of the Rhizobiaceae in the ␣-Proteobacteria (including the genera Allorhizobium, Azorhizobium, Bradyrhizobium, Mesorhizobium, Rhizobium, and Sinorhizobium) (30, 34), recently there has been an increasing number of reports of members of the ␤-Proteobacteria being isolated from nodules. So far, these include Burkholderia tuberum strain STM678 and Burkholderia phymatum strain STM815 (originally isolated from Aspalathus carnosa in South Africa and Machaerium lunatum in French Guiana, respectively [26,39]), Ralstonia taiwanensis strains (isolated from Mimosa pudica in Taiwan and India and Mimosa diplotricha in Taiwan [8,41] and now renamed Cupriavidus taiwanensis [38]), and several Burkholderia strains isolated from Mimosa casta, Mimosa pigra (synonym, Mimosa pellita), M. pudica, and another mimosoid legume, Abarema macradenia, in Panama (3). Although symbiotic genes (nifH and nodA) have been identified in the Burkholderia strains STM678 and STM815, so far there is very little physiological and structural evidence of their symbiotic nature, and they have been shown to form only ineffective nodules on the promiscuous legume Macroptilium atropurpureum (26). More convincingly, not only have some of the Panamanian Burkholderia strains been shown to possess symbiosis-relat...

The Structure and Evolution of Beta-Rhizobial Symbiotic Genes Deduced from Their Complete Genomes

“…T was found to be more closely related to Methylobacterium nodulans (Alphaproteobacteria) based on its DNA and amino acid sequences, but its nifH sequence is closer to free-living Burkholderia (Betaproteobacteria) (Figure 3) [6,7,63]. As stated earlier, in contrast to STM678 T , which nodulates papilionoideae, in our complete genome study we found that B. tuberum sv.…”

Burkholderia mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Taiwan and South America

“…This species has been isolated from nodules of Mimosa pudica, Mimosa diplotricha and Mimosa pigra (synonym Mimosa pellita) in Taiwan (Chen et al, 2001(Chen et al, , 2003a(Chen et al, , 2005b and from M. pudica in northern and southern India (Verma et al, 2004), and the type strain, LMG 19424 T , has been shown to nodulate M. pudica and M. diplotricha effectively (Chen et al, 2003b). More recently, there has been a greater focus on b-rhizobia in the genus Burkholderia, as these are being isolated from Mimosa and related species with much greater frequency than is C. taiwanensis, particularly in South America and Central America (Barrett & Parker, 2005, 2006Chen et al, 2005a), but also in Taiwan from the invasive legume M. pigra (Chen et al, 2005b). However, with the exception of Burkholderia caribensis TJ182, B. phymatum STM815 T and B. tuberum STM678 T (Vandamme et al, 2002), the taxonomic positions of Burkholderia legume symbionts have not yet been described.…”

“…1). These sequences were compared with published 16S rRNA gene sequences of other Burkholderia species, as described previously (Chen et al, 2001(Chen et al, , 2005a. The phylogenetic analysis showed that these nine strains form a single cluster (99?5-100?0 % 16S rRNA gene sequence similarity) and belong to the genus Burkholderia within the Betaproteobacteria.…”

Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica

“…Although it was generally accepted that legumes were nodulated exclusively by relatives of Rhizobium in the class Alphaproteobacteria, the so-called 'alpharhizobia', over the last 10 years there have been an increasing number of reports of legumes being nodulated by members of the Betaproteobacteria (the so-called 'betarhizobia') (Gyaneshwar et al, 2011). Cupriavidus taiwanensis LMG19424 and Burkholderia phymatum STM815 were among the first identified nodulating betaproteobacterial strains (Gyaneshwar et al, 2011) and both are highly effective nitrogen-fixing symbionts of Mimosa species (Chen et al, 2003(Chen et al, , 2005Elliott et al, 2007;dos Reis et al, 2010).…”