“…And while TSVD latent 53, the third contributing factor to peripheral vascular disease, does include GO processes related to cardiovascular morphology and function, it only predominantly prioritizes PITX2, and none of the other important genes implicated by GUIDE latent 8. For GUIDE, the third highest factor, GUIDE latent 64, significantly prioritizes genes such as AHR, PML, GDNF, and IRX1-3, which were not tagged by TSVD latent factors, but were recently implicated in important mechanisms contributing to vascular disease, such as vascular inflammatory pathways, atherosclerosis, endothelial dysfunction, and oxidative stress [34,35,36,37]. Running a GUIDE model on an LD-pruned set of FinnGen data [38] (r 2 < 0.2, with 188,140 SNPs and 2408 traits) revealed additional insights not found in the UKB models.…”