Gangliosides are glycosphingolipids composed of an oligosaccharide
that contains one or more sialic acid residues and is linked to a
ceramide, a lipid composed of a long chain base (LCB) that bears an
amide-linked fatty acyl group (FA). The ceramide portions of gangliosides
are embedded in cell membranes; the exposed glycans interact with
the extracellular environment. Gangliosides play a myriad of roles
in activities such as cell–cell communication, formation of
lipid rafts, cellular adhesion, calcium homeostasis, host-pathogen
interaction, and viral invasion. Although the epitopes responsible
for the interactions of gangliosides are located in the glycan, the
epitope presentation is strongly influenced by the orientation of
the attached ceramide within the lipid membrane, a feature that depends
on the details of its structure, that is, the specific LCB and FA.
Since the identities of both the glycan and the ceramide affect the
activity of gangliosides, it is important to characterize the individual
intact molecular forms. We report here a mass spectrometry-based method
that combines the information gained from low-energy collision-induced
dissociation (CID) measurements for the determination of the glycan
with tandem mass spectra obtained at stepped higher-energy CID for
the detailed characterization of the LCB and FA components of intact
gangliosides. We provide results from applications of this method
to the analysis of gangliosides present in bovine and human milk in
order to demonstrate the assignment of LCB and FA for intact gangliosides
and differential detection of isomeric ceramide structures.