2009
DOI: 10.1158/1078-0432.ccr-09-0300
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Profiling of Chemonaive Osteosarcoma and Paired-Normal Cells Identifies EBF2 as a Mediator of Osteoprotegerin Inhibition to Tumor Necrosis Factor–Related Apoptosis-Inducing Ligand–Induced Apoptosis

Abstract: Purpose: Osteosarcoma is the most prevalent bone tumor in children and adolescents.At present, the mechanisms of initiation, maintenance, and metastasis are poorly understood. The purpose of this study was to identify relevant molecular targets in the pathogenesis of osteosarcoma. Experimental Design: Tumor chemonaive osteoblastic populations and paired control normal osteoblasts were isolated and characterized phenotypically from seven osteosarcoma patients. Global transcriptomic profiling was analyzed by rob… Show more

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Cited by 34 publications
(30 citation statements)
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“…All samples were obtained with written informed consent from patients and/or their parents, and the protocol was approved by the local ethics committee (CEIC-CUN). Human osteoblasts were isolated and characterized according to procedures we have published previously [4,8]. Normal osteoblastic cells were passaged 1 to 5 times, whereas tumoral cells were passaged between 20 and 40 times; in all cases, cells were 90% confluent and in logarithmic growth phase prior to molecular analysis.…”
Section: Patients and Clinical Samplesmentioning
confidence: 99%
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“…All samples were obtained with written informed consent from patients and/or their parents, and the protocol was approved by the local ethics committee (CEIC-CUN). Human osteoblasts were isolated and characterized according to procedures we have published previously [4,8]. Normal osteoblastic cells were passaged 1 to 5 times, whereas tumoral cells were passaged between 20 and 40 times; in all cases, cells were 90% confluent and in logarithmic growth phase prior to molecular analysis.…”
Section: Patients and Clinical Samplesmentioning
confidence: 99%
“…RNA was isolated, labelled and hybridized on HGU133A chips (Affymetrix) by Progenika Biopharma as previously described [4]. The test set comprised 14 samples: osteosarcoma cell lines and the paired osteoblastic control cell lines derived from 7 patients (numbers 473, 475, 486, 491, 500, 524 and 531 in Table 1).…”
Section: Rna Extraction For Microarray Analysismentioning
confidence: 99%
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“…Several studies have shown that EBF inactivation due to genomic deletion, epigenetic silencing, or somatic point mutations exists in several types of cancer, including leukemia, glioblastoma, and pancreatic cancer, supporting the emerging roles of the EBF family in tumor suppression 303132 . Another study showed that silencing EBF2 led to a reduced resistance to apoptosis in chemo-naive tumor-derived cell populations from patients diagnosed with sporadic osteosarcoma 33 . However, EBF2 has not been investigated within the context of a fluoropyrimidine regimen.…”
Section: Discussionmentioning
confidence: 99%
“…Low expression probes were removed by filtering those that did not exceed a level of expression of 32 in at least one of the samples for each condition. Differentially expressed genes were identified using LIMMA (linear models for microarray data) method [27]. …”
Section: Methodsmentioning
confidence: 99%