a b s t r a c tA novel explanation is proposed for the metabolic differences underlying two distinct rat urinary compositional phenotypes i.e. that these may arise from differences in the gut microbially-mediated metabolism of phenylalanine. As part of this hypothesis, it is further suggested that elements of the mammalian gut microbiota may convert phenylalanine to cinnamic acid, either by means of an ammonia lyase-type reaction or by means of a three step route via phenylpyruvate and phenyllactate. The wider significance of such conversions is discussed with similar metabolism of tryptophan and subsequent glycine conjugation potentially explaining the origin of trans-indolylacryloylglycine, a postulated marker for autism. Ó 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
Metabolite profilingMetabolite profiling ('metabonomics'/'metabolomics') is a rapidly growing area of analytical science that has immense biomedical potential, with urine samples being particularly informative, convenient to obtain and analyse [1]. A particular strength of this still-developing analytical approach is that metabolite profiles are sensitive to a whole range of factors, both genomic and environmental, and, thereby, provide a multifactorial overview of a subject's status. In one general application of this 'systems biology' approach, the changes that are induced in endogenous metabolite profiles by stressors, such as drugs and toxins, are monitored and evaluated [1]. However, 'baseline' metabolite profiles are also highly informative and may, for instance, be indicative of gender, other genetic factors, dietary status or disease [1,2]. A great deal remains to be understood regarding the significance of inter-subject variation in baseline metabolite profiles and, to do so, such variation has to be correlated with known factors. One new approach, called 'pharmaco-metabonomic phenotyping', or simply 'pharmacometabonomics', has considerable potential to reveal the hidden significance of baseline metabolite profiles [3,4]. Thus, in a first study in humans [4], the presence of high levels of p-cresol sulfate in the urine has been associated with a lower residual sulfonation capacity and an important and hitherto-unrecognised effect of the gut microbiota on paracetamol (acetaminophen) metabolism has been demonstrated. That study provides an important insight into the impact of the gut microbiota on drug metabolism [5] whilst also serving as a reminder of the major role gut microbes play in dictating urinary composition [6]. The present report further discusses the impact of the gut microbiota on baseline urinary metabolite profiles and addresses the origins of two different rat urinary phenotypes.
The 'chlorogenic acid' phenotype and its originsRats are an important experimental model for many investigations and, in recent years, there have been repeated reports of two distinct rat urinary phenotypes, which are not attributable to dietary differences [7][8][9][10]. These phenotypes, whic...