This study focuses on the effect of waveforms, i.e., signal length and period in intermittent transmission, for electromagnetic interference (EMI) on medical devices. It was already shown that the intermittent transmission with the period of 1 s (500 ms: ON and 500 ms: OFF) tends to cause EMI on medical devices compared to continuous transmission. To evaluate the impact of waveforms for EMI on medical devices, we conducted an experiment at 837.5 MHz and 1950 MHz using five medical devices that yielded the following results. For EMI dissipation, the input power of antenna simulating mobile phones increased and the separation distance between an antenna and medical device decreased as the signal length became shorter in the case of a signal length of less than 10 ms. On the other hand, the signal period exhibited no specific tendency regarding such power and distance. We confirmed that previous EMI tests, in which we used a radio signal with the length and period of 100 ms in intermittent transmission, were conservative from the viewpoint of waveforms. Results of this study indicate that the influence of EMI on medical devices does not depend on the average power but on the burst power. Based on this, EMI characteristics on medical devices for a certain radio system could be estimated based on previous EMI test results for other radio systems if their frequencies are close to each other and the signal specifications of them are clearly determined.