“…It is noteworthy that two of these are Hedgehog target genes, namely, PTCH1 and HHIP , function as readouts of pathway activity, and act to fine-tune Hedgehog signals based upon negative feedback loops. Given the reported presence of primary cilia (PC) in GIST [25, 26], as well as the importance of PC in Hedgehog signaling transduction, it is also noteworthy that four proteins responsible for anterograde trafficking of cargo in PC, namely, KIF3A (encoding kinesin family member 3A), IFT52 (intraflagellar transport 52), IFT88 (intraflagellar transport 88), and IFT172 (intraflagellar transport 172), were significantly overexpressed in GIST as compared to ICC (Figure 3B). Overall, the top 7 overexpressed (>16-fold) genes in GIST relative to ICC (in descending order) are HIPK2 (homeodomain-interacting protein kinase 2), IFT52, FOXF1 (forkhead box F1), RB1 (retinoblastoma 1), PtTCH1, RAB23 , and TGFBR2 (transforming growth factor beta receptor II).…”