Genes for the biosynthesis of daunorubicin (daunomycin) and doxorubicin (adriamycin), important antitumor drugs, were cloned from Streptomycespeucetius (the daunorubicin producer) and S. peucetius subsp. caesius (the doxorubicin producer) by use of the actIltemla and actII polyketide synthase gene probes. Restriction Daunorubicin (daunomycin) and doxorubicin (adriamycin) are commercially important antibiotics with potent antitumor activity. Daunorubicin, first isolated in 1963 from Streptomyces peucetius (6, 7), was subsequently found in a number of other Streptomyces spp. (27). Doxorubicin was isolated in 1969 from S. peucetius subsp. caesius, a mutant of the wild-type strain (2), and has important clinical applications in cancer chemotherapy (1), even though both doxorubicin and daunorubicin cause cardiotoxic side effects that are dose limiting and irreversible. The production costs of these antibiotics are high because of low titers and formation of a complex mixture of products by the producing bacteria. Therefore, a genetic study of the biosynthesis of daunorubicin and doxorubicin was undertaken in our laboratory to elucidate the organization and regulation of the biosynthetic genes, with the hope that it may also lead to overproducing strains or strains with a simpler spectrum of secondary metabolites. This work has been facilitated by the recognition that the early genes involved in polyketide biosynthesis by other streptomycetes, such as the S. coelicolor actI and actIlI genes (9, 17) and the S. glaucescens tcmIa genes (20), hybridize to the analogous genes in other polyketide producers (16) and by the fact that antibiotic genes have been found to be clustered in all of the examples studied (14).A previous report (24) from this laboratory demonstrated that the daunorubicin producer S. peucetius (ATCC 29050) contains five nonoverlapping regions of DNA that hybridized to the actIl/tcmIa or actIII probe. The properties of S. peucetius and S. lividans strains transformed with clones from four of these regions supported the belief that many of the daunorubicin production (dnr) genes resided in region IV but also raised the possibility that bona fide dnr genes or genes that influence daunorubicin production and self-resistance were present in the three other regions (24). The latter idea is best tested by examining the effects of deletions in * Corresponding author.each of these four regions on daunorubicin production and resistance.Since our preliminary evidence (24) indicated that some portion of region II had been deleted from S. peucetius subsp. caesius (ATCC 27952), we made a detailed study of the properties of cosmid clones from three nonoverlapping regions of DNA in this strain. The effects of these clones and additional clones from the wild-type 29050 strain in homologous and heterologous hosts confirm that the genes required for formation of e-rhodomycinone, a key intermediate of daunorubicin biosynthesis, are present in region IV. In addition, we demonstrated that this region contains two daunorubi...