Objective To explore pathogenic/likely pathogenic copy number variations (p/lp CNVs) and regions of homozygosity (ROH) in fetal central nervous system (CNS) malformations.Methods Clinical data from 539 fetuses with CNS malformations diagnosed by ultrasound / MRI and chromosomal microarray analysis (CMA) was performed at the Third A liated Hospital of Zhengzhou University from January 2016 to December 2019 were collected retrospectively. The fetuses were divided into two groups according to whether they had other structural abnormalities. The CNS phenotypes of the two groups were further classi ed into the simple or complicated type (≥2 types).Results (1) A total of 35 cases of p/lp CNVs were found. The incidence of p/lp CNVs in extra-CNS group 18.00 % (9 / 50) was greater than isolated group 5.32 % (26 / 489) (P < 0.01), while the simple type and complicated type has no statistical signi cance. (2) In the simple type, the three most common p/lp CNVs phenotypes were holoprosencephaly, Dandy-Walker syndrome, and exencephaly. There were no p/lp CNVs associated with anencephaly, microcephaly, arachnoid cysts, ependymal cysts, intracranial hemorrhage. (3) Only four cases of ROH were found, there were no cases of uniparental disomy or autosomal diseases.
ConclusionThe p/lp CNVs detection rate varied signi cantly among the different phenotypes of CNS malformations. While simple central nervous system abnormalities may be associated with genetic syndromes, CMA is not necessary for all CNS malformations. It is likely that ROH are not required for central nervous system malformations.