2003
DOI: 10.1890/0012-9658(2003)084[0798:ptnons]2.0.co;2
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Predicting the Number of New Species in Further Taxonomic Sampling

Abstract: In evaluating the effectiveness of further sampling in species taxonomic surveys, a practical and important problem is predicting the number of new species that would be observed in a second survey, based on data from an initial survey. This problem can also be approached by estimating the corresponding expected number of new species. A. R. Solow and S. Polasky recently proposed a predictor (or estimator), with the form of a sum of many terms, that was derived under the assumption that all unobserved species i… Show more

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Cited by 148 publications
(125 citation statements)
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“…This in turn suggests that the subdominant character of the D b PB1-F2 62 -specific CTL response reflects the incomplete recruitment of naive T cells into the mature response, while exactly the opposite is the case for the immunodominant D b NP 366 - and D b PA 224 -specific populations. As related in the supplemental data (Supplemental Figure 4), this analysis was confirmed by Chao1 nonparametric statistical analysis (38).…”
Section: Evaluation Of Ctlp Recruitment By Tcr Vβ Phenotypingsupporting
confidence: 75%
“…This in turn suggests that the subdominant character of the D b PB1-F2 62 -specific CTL response reflects the incomplete recruitment of naive T cells into the mature response, while exactly the opposite is the case for the immunodominant D b NP 366 - and D b PA 224 -specific populations. As related in the supplemental data (Supplemental Figure 4), this analysis was confirmed by Chao1 nonparametric statistical analysis (38).…”
Section: Evaluation Of Ctlp Recruitment By Tcr Vβ Phenotypingsupporting
confidence: 75%
“…These estimators start with a nonparametric coverage-based richness estimate, and further adapt nonparametrically to the degree of variability in the frequency counts; different estimators are recommended depending on the degree of variability observed (11). For the required computations, we used the software SPADE (17). We calculated these estimates and their SEs for the collections of rare frequencies corresponding to the right-truncation points resulting from the best parametric analyses.…”
Section: Methodsmentioning
confidence: 99%
“…This algorithm allows us to obtain correct ML estimates of the parameters and to compute (asymptotically) correct SEs, simultaneously for all parametric models. We use the newly available software SPADE (17) for the coverage-based nonparametric estimates. We apply this strategy to a large original 16S rRNA survey of bacteria in a marine sediment sample, and we analyze the amount of ''missing'' diversity at different phylogenetic levels, from operational taxonomic units (OTUs) combining very similar organisms to OTUs representing large clades (99-60% sequence identity as cut-off values).…”
mentioning
confidence: 99%
“…edu.tw/softwareCE.html). The bias-corrected Chao 1 estimate (Shen et al 2003;Chao 2005;Chao et al 2006) was chosen because other methods did not calculate number of species from small samples. There was a strong positive correlation between observed and estimated number of species and statistical models based on these two data sets gave similar results (see, Supplementary material for results of the stepwise regression analysis made on estimated number of species and for some cautions on the possible biases when interpreting these results).…”
Section: Statistical Analysesmentioning
confidence: 99%