this study aimed to validate a fully automatic method to quantify knee-extensor muscle volume and exercise-induced hypertrophy. By using a magnetic resonance imaging-based fat-water separated twopoint Dixon sequence, the agreement between automated and manual segmentation of a specific ~15cm region (partial volume) of the quadriceps muscle was assessed. We then explored the sensitivity of the automated technique to detect changes in both complete and partial quadriceps volume in response to 8 weeks of resistance training in 26 healthy men and women. There was a very strong correlation (r = 0.98, P < 0.0001) between the manual and automated method for assessing partial quadriceps volume, yet the volume was 9.6% greater with automated compared with manual analysis (P < 0.0001, 95% limits of agreement −93.3 ± 137.8 cm 3 ). Partial muscle volume showed a 6.0 ± 5.0% (manual) and 4.8 ± 8.3% (automated) increase with training (P < 0.0001). Similarly, the complete quadriceps increased 5.1 ± 5.5% with training (P < 0.0001). The intramuscular fat proportion decreased (P < 0.001) from 4.1% to 3.9% after training. In conclusion, the automated method showed excellent correlation with manual segmentation and could detect clinically relevant magnitudes of exercise-induced muscle hypertrophy. this method could have broad application to accurately measure muscle mass in sports or to monitor clinical conditions associated with muscle wasting and fat infiltration.Body composition plays a crucial role for overall health but also in specific sports and clinical settings. A number of pathological conditions are associated with reduced muscle mass, including muscular dystrophies, spinal cord injuries, sarcopenia, cancer, heart failure, neurological disease and inflammatory myopathies. In sports, muscle mass can be a major determinant of performance, and athletic injuries are typically associated with reduced muscle mass 1 . In all of the scenarios where muscle atrophy is evident, loss of strength and functional capacity most often occur in parallel 2 .Numerous methods and techniques have been developed to assess body composition. These techniques include hydro-densitometry, air-displacement plethysmography, dual-energy x-ray absorptiometry (DXA), ultrasound and bio-impedance. In particular, the use of the DXA-method has increased in popularity over recent years, and is now commonly used in research studies assessing lean mass in cross-sectional or interventional studies 3,4 . While the DXA-method is relatively easy to use and requires essentially no manual data analysis, it is still subject to a number of limitations when detailed measurements of regional muscle mass are warranted 4 . The DXA scan uses ionizing radiation, provides only 2-dimensional projections of the body, and is based on several assumptions regarding segment constancy in tissue composition 5 . Moreover, the DXA-method underestimates the degree of age-related loss of muscle mass 6 , and it is not possible to separate between different muscle groups, or to quantify mus...