The lactococcal abortive phage infection mechanism AbiQ recently was classified as a type III toxin-antitoxin system in which the toxic protein (ABIQ) is regulated following cleavage of its repeated noncoding RNA antitoxin (antiQ). In this study, we investigated the role of the antitoxin in antiphage activity. The cleavage of antiQ by ABIQ was characterized using 5= rapid amplification of cDNA ends PCR and was located in an adenine-rich region of antiQ. We next generated a series of derivatives with point mutations within antiQ or with various numbers of antiQ repetitions. These modifications were analyzed for their effect on the antiphage activity (efficiency of plaquing) and on the endoribonuclease activity (Northern hybridization). We observed that increasing or reducing the number of antiQ repeats significantly decreased the antiphage activity of the system. Several point mutations had a similar effect on the antiphage activity and were associated with changes in the digestion profile of antiQ. Interestingly, a point mutation in the putative pseudoknot structure of antiQ mutants led to an increased AbiQ antiphage activity, thereby offering a novel way to increase the activity of an abortive infection mechanism.
Lactococcus lactis is a Gram-positive bacterium used by the dairy industry to transform milk into fermented products such as cheese and yogurt. Many virulent phages specific to L. lactis strains have emerged over years of production, and despite numerous control strategies, they still represent one of the major risks of productivity loss in cheese factories (1). The constant threat of phage infection led to the selection of strains with robust natural antiphage systems. Antiphage mechanisms can prevent phage adsorption, block the entry of phage DNA, cleave foreign nucleic acids using restriction-modification systems or CRISPR-Cas systems, or abort infection through altruistic suicide (2). The latter group of antiphage mechanisms are known as abortive infection systems (Abi). Globally, they act at various steps of the phage replication cycle, from DNA replication to bacterial lysis (3, 4), but their common characteristic is inducing cell death in phageinfected bacteria, seemingly to favor the survival of the bacterial population (3).To date, an impressive number of distinct Abi systems have been identified in L. lactis (3-6). These 23 systems are effective, at various degrees, against some or all prevalent groups of lactococcal phages (936, c2, and P335) found in dairy plants (3). Nevertheless, only a few Abi systems have been characterized at the molecular level. In the lactococcal AbiD1 system, the phage protein ORF1 (bIL66) activates abiD1 translation, and the effective bacterial protein AbiD1 reduces transcription of a phage gene coding for an RuvC-like resolvase that is essential for replication and maturation of viral DNA (7-10). In the AbiK system, the AbiK protein has a template-independent reverse transcriptase activity that generates random cDNA fragments, which likely prevents viral protein ...