Maintaining calcium ion (Ca2+) homeostasis is crucial for normal neuronal function. Altered Ca2+ homeostasis interferes with Ca2+ signaling processes and affects neuronal survival. In this study, we used homozygous leaner and tottering mutant mice, which carry autosomal recessive mutations in the gene coding for the α1A pore forming subunit of CaV2.1 (P/Q-type) voltage-gated calcium channels (VGCC). Leaner mice show severe ataxia and epilepsy, while tottering mice are less severely affected. Leaner cerebellar granule cells (CGC) show extensive apoptotic cell death that peaks at postnatal (P) day 20 and continues into adulthood. Intracellular Ca2+ ([Ca2+]i) concentrations in leaner and tottering mouse Purkinje cells have been described, but [Ca2+]i concentrations have not been reported for granule cells, the largest neuronal population of the cerebellum. Using the ratiometric dye, Fura-2 AM, we investigated the role of Ca2+ homeostasis in CGC death during postnatal development by demonstrating basal [Ca2+]i, depolarization induced Ca2+ transients, and Ca2+ transients after completely blocking CaV2.1 VGCC. From P20 onward, basal [Ca2+]i levels in leaner CGC were significantly lower compared to age-matched wild-type CGC. We also compared basal [Ca2+]i levels in leaner and wild-type CGC to basal [Ca2+]i in tottering CGC. Potassium chloride induced depolarization revealed no significant difference in Ca2+ transients between leaner and wild-type CGC, indicating that even though leaner CGC have dysfunctional P/Q-type VGCC, Ca2+ transients after depolarization are the same. This suggests that other VGCC are compensating for the dysfunctional P/Q channels. This finding was further confirmed by completely blocking CaV2.1 VGCC using ω-Agatoxin IV-A.