Background
Exposure to drugs of abuse alters the epigenetic landscape of the brain’s reward regions such as the nucleus accumbens (NAc). We investigated how combinations of chromatin modifications affect genes that regulate responses to cocaine. We focused on autism-candidate 2 (Auts2), a gene linked to human evolution and cognitive disorders, which displays strong clustering of cocaine-induced chromatin modifications in this brain region.
Methods
We combined chromosome conformation capture (4C and 3C) and related approaches with behavioral paradigms relevant to cocaine phenotypes. Cell type-specific functions were assessed by FACS-sorting and viral-mediated overexpression in Cre-dependent mouse lines.
Results
We observed that Auts2 gene expression is increased by repeated cocaine administration specifically in D2-type medium spiny neurons (MSNs) in NAc, an effect seen in male but not female mice. Auts2 mRNA expression was also upregulated postmortem in NAc of male human cocaine addicts. We obtained evidence that chromosomal looping, bypassing 1,524 kb of linear genome, connects Auts2 to the calneuron 1 (Caln1) gene locus under baseline conditions. This looping was disrupted after repeated cocaine exposure, resulting in increased expression of both genes in D2 MSNs. Cocaine exposure reduces binding of CTCF, a chromosomal scaffolding protein, and increases histone and DNA methylation, at the Auts-Caln1 loop base in NAc. Cell type-specific overexpression of Auts2 or Calnl in D2 MSNs demonstrated that both genes promote cocaine reward.
Conclusions
These findings suggest that cocaine-induced alterations of neuronal 3D genome organization destabilize higher order chromatin at specific loci that regulate responses to the drug.