The studies reported here were motivated by the desire to probe the extent to which benzynes, one of the classical reactive intermediates in organic chemistry, would react in discriminating fashion with benzyne trapping reagents that contain multiple functional groups and, accordingly, possible modes and sites of reactivity. We deemed that natural products comprise a palette of potential multifunctional compounds with which to address this question. We show that benzynes produced by the hexadehydro-Diels-Alder (HDDA) reaction react with many secondary metabolites with a high preference for one among several potential pathways. Examples demonstrating such selectivity include reactions with: phenolics, through dearomatizing ortho-substitution; alkaloids, through Hofmann-type elimination; tropolone and furan, through cycloaddition; and alkaloids, through three-component fragmentation-coupling reactions. We also demonstrate that the cinchona alkaloids quinidine and quinine give rise to products, some in as few as three steps, that enable subsequent and rapid access to structurally diverse, polyheterocyclic compounds. The results show that benzynes are quite discriminating in their reactivity—a trait perhaps not broadly appreciated.