Population genetics data for 22 autosomal STR loci in European, South Asian and African populations using SureID® 23comp Human DNA Identification Kit

Iyavoo, Sasitaran; Afolabi, Olatunde; Boggi, Byron; Bernot, Ausma; Haizel, Thomas

doi:10.1016/j.forsciint.2019.05.033

Cited by 11 publications

(3 citation statements)

References 20 publications

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“…The average values of PIC for Dong, Yi, Han, and Chuanqing are 0.3142, 0.3150, 0.3191, and 0.3182, respectively. Since InDels are di-alleles, the 30 InDels are less polymorphic than STR (Iyavoo et al, 2019;Lin et al, 2019;Wen et al, 2019). The Ho values for Dong, Yi, Han, and Chuanqing samples are in the ranges of 0.1149-0.5541, 0.0977-0.5526, 0.1400-0.5450, and 0.1539-0.5604, respectively.…”

Section: Linkage Disequilibrium Forensic Parameters and Allele Freqmentioning

confidence: 99%

Forensic Features and Population Genetic Structure of Dong, Yi, Han, and Chuanqing Human Populations in Southwest China Inferred From Insertion/Deletion Markers

Liu

Zhang

et al. 2020

Front. Genet.

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Guizhou province in southwest China has abundant genetic and cultural diversities, but the forensic features and genetic structure of Guizhou populations remain poorly understood due to the sparse sampling of present-day populations. Here, we present 30 insertion/deletion polymorphisms (InDels) data of 591 human individuals collected from four populations, Dong, Yi, Han, and Chuanqing residing in Guizhou. We calculated the forensic parameters of 30 InDel loci and found that this panel meets the efficiency of forensic personal identification based on the high combined power of discrimination, but it could only be used as a complementary tool in the parentage testing because of the lower combined probability of exclusion values. The studied populations are genetically closer related to geographically adjacent or linguistically related populations in southern China, such as the Tai-Kadai and Hmong-Mien speaking groups. The unrecognized ethnic Chuanqing people show an additional genetic affinity with Han Chinese, highlighting the role of possible military immigrations in their origin.

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Section: Linkage Disequilibrium Forensic Parameters and Allele Freqmentioning

confidence: 99%

Forensic Features and Population Genetic Structure of Dong, Yi, Han, and Chuanqing Human Populations in Southwest China Inferred From Insertion/Deletion Markers

Liu

Zhang

et al. 2020

Front. Genet.

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“…Human identification (HID) and paternity testing are two fundamental and traditional tasks of forensic genetics. Short tandem repeat (STR), a kind of DNA length polymorphism characterized by high genetic polymorphism and discrimination capacity, constitutes the standard DNA genetic marker for the purposes of HID and paternity testing [ 1–3 ]. However, some disadvantages such as large amplified fragments and high mutation rates limit the wide use of STRs in forensic genetics.…”

Section: Introductionmentioning

confidence: 99%

An Interpretation of the Genetic Polymorphism and Population Genetic Background of Ankang Han Population via a Novel InDel Panel

Cui

Jin

Fang

et al. 2021

Forensic Sciences Research

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In this research, genotyping data of 43 InDel loci in 311 Han individuals in Ankang City, Shaanxi Province, China were detected using a self-developed five-dye multiplex amplification panel. The allelic frequencies and forensic parameters of all InDel loci were calculated. The combined power of discrimination and probability of exclusion values were 0.999 999 999 999 999 998 827 39 and 0.999 887 424, respectively, which demonstrated that this 43-InDel panel was powerful for individual identifications in Ankang Han population. Moreover, genetic distances, pairwise F ST values, principal component analyses, phylogenetic trees and STRUCTURE analyses were performed to investigate the genetic affinities between Ankang Han and reference groups. Population genetic investigations indicated that Ankang Han population had a close genetic relationship with Southern Han population compared with other reference groups.

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“…The SureID 23 comp was used to generate population genetic data for three main populations European, South Asian and African 25 , but it is believed that the kit has not been validated as no publications currently exist, either independently or from the manufacturer. Therefore, this study aimed to evaluate the performance of the SureID 23comp Kit for kinship applications as a supplementary STR kit.…”

Section: Introductionmentioning

confidence: 99%

An evaluation of the SureID 23comp Human Identification Kit for kinship testing

Alsafiah

Aljanabi

Hadi

et al. 2019

Sci Rep

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Short tandem repeat (STR) profiling has been routinely used in kinship testing since the introduction of commercial kits in the mid-1990s. While 15 to 23 STR loci normally give definitive results in simple kinship testing, additional loci are sometimes required to resolve complex cases. The SureID 23comp Human Identification Kit, recently released by Health Gene Technologies (China), multiplexes amelogenin and 22 autosomal STRs, 17 of which are non-CODIS STRs. This enables the profiling of 38–40 loci when used in conjunction with widely used commercial kits. In this study, the kit was evaluated for kinship applications as a supplementary STR kit following the minimum criteria for validation recommended by the European Network of Forensic Science Institutes (ENFSI) and the Scientific Working Group on DNA Analysis Methods (SWGDAM) using 500 samples. Performance was comparable with other commercial kits demonstrating: repeatability and reproducibility; precision (maximum s.d. 0.1048 nt); accuracy, all alleles were within ±0.41 nt compared to the actual sizes; heterozygous peak balances at all loci >68%; stutter ratios ranged from 3.8% to 16.15%; full profiles were generated with 125 pg DNA (95.12% of alleles at 62 pg),; and we found 100% concordance over 5 common STRs with the GlobalFiler kit.

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Population genetics data for 22 autosomal STR loci in European, South Asian and African populations using SureID® 23comp Human DNA Identification Kit

Abstract: Allele frequency data for 22 short tandem repeat loci; D18S1364,

Cited by 11 publications

References 20 publications

Forensic Features and Population Genetic Structure of Dong, Yi, Han, and Chuanqing Human Populations in Southwest China Inferred From Insertion/Deletion Markers

Forensic Features and Population Genetic Structure of Dong, Yi, Han, and Chuanqing Human Populations in Southwest China Inferred From Insertion/Deletion Markers

An Interpretation of the Genetic Polymorphism and Population Genetic Background of Ankang Han Population via a Novel InDel Panel

An evaluation of the SureID 23comp Human Identification Kit for kinship testing

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