Population Genetic Structure of Pacific Herring Clupea pallasii in the Northwestern Pacific Ocean Based on Microsatellite Analysis

Курносов, Д. С.; Orlova, S. Yu.

doi:10.1134/s0032945221020090

Cited by 3 publications

(1 citation statement)

References 35 publications

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“…Fortunately, due to the rapid advancements in sequencing technologies [13], highly polymorphic microsatellite markers have been developed for numerous aquaculture species, such as Pinctada fucata, pearl oyster (Pinctada maxima), and black amur bream (Megalobrama terminalis) [14][15][16]. Because of its high density, genome-wide distribution, and codominance, microsatellite has been widely used in the survey of genetic diversity and population structure [17,18]. For its high polymorphism, microsatellite has been used as a valuable molecular tool for parentage determination and pedigree tracing [19][20][21][22][23][24][25].…”

Section: Introductionmentioning

confidence: 99%

Parentage Determination of Chinese Hooksnout Carp (Opsariichthys bidens) Based on Microsatellite DNA Markers

Ge,

Xu,

Ren

et al. 2024

Aquaculture Research

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In this study, a panel of 14 microsatellite markers was screened to determine the parentage of 144 progenies in 12 Chinese hooksnout carp (Opsariichthys bidens) full-sib families. The combined exclusion probabilities for 14 loci were 97.6% and 99.9%, respectively, when there was no available parent information or only one parent information was provided. Simulation analysis demonstrated that the power of five loci to exclude false parents exceeded 99.0%, while that of eight loci reached 99.9% based on allele frequency data obtained from full-sib families (168 individuals). Moreover, the cumulative assignment success rate reached 100% with known parental and filial information when utilizing 13 or more loci, even in cases where no parent information was available. The results showed that this set of microsatellite markers proved to be a reliable and efficient tool for parentage determination of O. bidens.

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Section: Introductionmentioning

confidence: 99%

Parentage Determination of Chinese Hooksnout Carp (Opsariichthys bidens) Based on Microsatellite DNA Markers

Ge,

Xu,

Ren

et al. 2024

Aquaculture Research

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Separated by Space and Time but United by Kinship: Phylogeographical and Phylogenetic History of Two Species of Eleginus (Gadidae) Based on the Polymorphism of Cyt b Mitochondrial DNA Gene

et al. 2023

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Genetic structure of marine and lake forms of Pacific herring Clupea pallasii

Orlova

Rastorguev

Bagno

et al. 2021

PeerJ

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The Pacific herring (Clupea pallasii) is one of the most important species in the commercial fisheries distributed in the North Pacific Ocean and the northeastern European seas. This teleost has marine and lake ecological forms a long its distribution in the Holarctic. However, the level of genetic differentiation between these two forms is not well known. In the present study, we used ddRAD-sequencing to genotype 54 specimens from twelve wild Pacific herring populations from the Kara Sea and the Russian part of the northwestern Pacific Ocean for unveiling the genetic structure of Pacific herring. We found that the Kara Sea population is significantly distinct from Pacific Ocean populations. It was demonstrated that lake populations of Pacific herring differ from one another as well as from marine specimens. Our results show that fresh and brackish water Pacific herring, which inhabit lakes, can be distinguished as a separate lake ecological form. Moreover, we demonstrate that each observed lake Pacific herring population has its own and unique genetic legacy.

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Population Genetic Structure of Pacific Herring Clupea pallasii in the Northwestern Pacific Ocean Based on Microsatellite Analysis

Cited by 3 publications

References 35 publications

Parentage Determination of Chinese Hooksnout Carp (Opsariichthys bidens) Based on Microsatellite DNA Markers

Parentage Determination of Chinese Hooksnout Carp (Opsariichthys bidens) Based on Microsatellite DNA Markers

Separated by Space and Time but United by Kinship: Phylogeographical and Phylogenetic History of Two Species of Eleginus (Gadidae) Based on the Polymorphism of Cyt b Mitochondrial DNA Gene

Genetic structure of marine and lake forms of Pacific herring Clupea pallasii

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