Population genetic data on 15 autosomal STR loci in Bangladeshi population

Hossain, Tania; Hasan, Md. Mahamud; Mazumder, Ashish Kumar; Momtaz, Pilu; Sharmin, Tarana; Sufian, Abu; Das, Sudipta; Akhteruzzaman, Sharif

doi:10.1016/j.fsigen.2014.04.012

Cited by 7 publications

(4 citation statements)

References 19 publications

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“…Principal components analysis was performed with MVSP 3.1 ( http://www.kovcomp.com ) based on allelic frequencies of the 15 autosomal STR loci. Nei’s standard genetic distances between currently studied and previously published populations (Russian 20 , Saraki Pakistan 21 , Korean 22 , Punjabi 23 , Indian 24 , Morocco 25 , Eastern Turkey 26 , Hong Kong 27 , Japanese 28 , Interior Sindh (unpublished), Hungarian 29 , South Iran 30 , Azerbaijan 31 , Turkish Cypriot 32 , Afghanistan 33 , Bangladesh 34 , Malaysia 35 , Kadazan Malaysia 36 , Sindh Pakistan 37 , Iraq 38 , Pashtuns Afghanistan 39 , Tajik Afghanistan 39 , Uzbek Afghanistan 39 , Turkmen Afghanistan 39 , Mongols of Mongolia 40 , Hazara Afghanistan 39 , Kuala Lumpur Malaysia 41 , Miao 42 , East Mongolia of China 43 , Dong 44 , Bouyei 45 , Han Liaoning 46 , Manchu Liaoning 47 , Hui Qinghai 48 , Uyghur China 49 , Russian in China 50 , Dongxiang Qinghai 51 , Salar Qinghai 51 , Kazakh China 13 ) were generated using the Phylip 3.69 package 52 and visualized with Mega7 software 53 .…”

Section: Methodsmentioning

confidence: 99%

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

Zhan

Adnan

Yu-zhang

et al. 2018

Sci Rep

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The Xinjiang Uyghur Autonomous Region of China (XUARC) harbors 47 ethnic groups including the Manchu (MCH: 0.11%), Mongols (MGL: 0.81%), Kyrgyz (KGZ: 0.86%) and Uzbek (UZK: 0.066%). To establish DNA databases for these populations, allele frequency distributions for 15 autosomal short tandem repeat (STR) loci were determined using the AmpFlSTR Identifiler PCR amplification kit. There was no evidence of departures from Hardy–Weinberg equilibrium (HWE) in any of the four populations and minimal departure from linkage equilibrium (LE) for a very small number of pairwise combinations of loci. The probabilities of identity for the different populations ranged from 1 in 1.51 × 1017 (MCH) to 1 in 9.94 × 1018 (MGL), the combined powers of discrimination ranged from 0.99999999999999999824 (UZK) to 0.9999999999999999848 (MCH) and the combined probabilities of paternal exclusion ranged from 0.9999979323 (UZK) to 0.9999994839 (MCH). Genetic distances, a phylogenetic tree and principal component analysis (PCA) revealed that the MCH, KGZ and UZK are genetically closer to the Han population of Liaoning and the Mongol population of Mongolia while the MGL are closer to Han, Japanese, Korean, Malaysian, Hong Kong Han and Russians living in China.

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Section: Methodsmentioning

confidence: 99%

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

Zhan

Adnan

Yu-zhang

et al. 2018

Sci Rep

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“…Fst statistics is one of the most widely used measures for genetic differentiation and plays a central role in genetic studies [ 11 ]. Reference populations including Hui [ 12 , 13 ], Uygur [ 14 , 15 ], Eastern Han (from Zhejiang, China) [ 16 , 17 ], Salar [ 18 , 19 ], Miao [ 20 , 21 ], Tibetan [ 22 , 23 ], Yi [ 21 , 24 ], Shandong Han [ 25 , 26 ], Korean [ 27 , 28 ], Bangladeshis [ 29 , 30 ], Serbian [ 31 , 32 ], Xibe [ 33 , 34 ], Dong [ 21 , 35 ], Maonan [ 21 , 36 ], Moroccan [ 37 , 38 ], Croatian [ 39 , 40 ], Nepalese [ 41 , 42 ], Jilin Han [ 43 , 44 ] and Liaoning Han [ 45 , 46 ] were used for population genetic analysis based on the same of autosomal STRs or Y-STR loci, respectively. The pairwise Fst and p values based on 15 STR loci between Southern Shaanxi Han population and other 19 populations were shown in Supplementary Table 1 .…”

Section: Resultsmentioning

confidence: 99%

Genetic variation and forensic characteristic analysis of 25 STRs of a novel fluorescence co-amplification system in Chinese Southern Shaanxi Han population

et al. 2017

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We analyzed the genetic polymorphisms of 15 autosomal and 10 Y-chromosomal STR loci in 214 individuals of Han population from Southern Shaanxi of China and studied the genetic relationships between Southern Shaanxi Han and other populations. We observed a total of 150 alleles at 15 autosomal STR loci with the corresponding allelic frequencies ranging from 0.0023 to 0.5210, and the combined power of discrimination and exclusion for the 15 autosomal STR loci were 0.99999999999999998866 and 0.999998491, respectively. For the 10 Y-STR loci, totally 100 different haplotypes were obtained, of which 94 were unique. The discriminatory capacity and haplotype diversity values of the 10 Y-STR loci were 0.9259 and 0.998269, respectively. The results demonstrated high genetic diversities of the 25 STR loci in the population for forensic applications. We constructed neighbor-joining tree and conducted principal component analysis based on 15 autosomal STR loci and conducted multidimensional scaling analysis and constructed neighbor-joining tree based on 10 Y-STR loci. The results of population genetic analyses based on both autosomal and Y-chromosome STRs indicated that the studied Southern Shaanxi Han population had relatively closer genetic relationship with Eastern Han population, and distant relationships with Croatian, Serbian and Moroccan populations.

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“…For inter-population comparison, four reference population were selected from Bangladesh, twenty from India, one from Pakistan, one from Nepal, one from China, and one from Uganda. The selected populations and sample size were as follows: Santal (n= 132), Dinajpur-Bangladesh; Bengali (n=595), Dhaka-Bangladesh 6 ; Chakma (n=113), Tripura (n=83), and Marma (n=83), Chittagong Hill Tracts-Bangladesh 7 ; Karmali (n=102), Kora (n=118), Maheli (n=98) and Lodha (n=198), Mahishya (n=120), Bauri (n=108) and Namasudra (n=110), Rajbanshi (n=91), Paliya (n=107) and Dhimal (n=66), West-Bengal India8- [8][9][10] ; Munda (n=68), Jharkhand-India 11 ; Bhil (n=297), Gujarat-India 12 ; Gond (n=89) and Brahmin (n=110), Madhya Pradesh-India 13 ; Adi Pasi (n=406), Aarunachal Pradesh-India 14 ; Balmiki (n=62), Punjab-India 15 ; Mahadev Koli (n=65), Maharashtra-India 15 ; Iyengar (n=67), Kurumans, (n=67) and Tamil (n=272), Tamilnadu-India [15][16] ; Nepalese (n=233), Nepal 17 ; Sindhi (n=181), Sindh-Pakistan 18 ; Han (n=208), Henan-central China 19 ; and Karimojong (n=218), Karamoja-Uganda 20 .…”

Section: Population Samplesmentioning

confidence: 99%

Genetic polymorphism and phylogenetic analysis of 15 autosomal STR markers in the Santal indigenous population of Bangladesh

Hasan

Rahman²,

Akhteruzzaman³

2021

Bioresearch Communications

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Fifteen autosomal STR markers, namely D8S1179, D21S11, D7S820, CSF1PO, D3S1358, TH01, D13S317, D16S539, D2S1338, D19S433, vWA, TPOX, D18S51, D5S818, and FGA were typed using AmpFlSTR® Identifiler® Plus PCR amplification systems in 132 unrelated Santal individuals of Bangladesh. Forensic efficiency parameters like, matching probability (MP), power of discrimination (PD), polymorphism information content (PIC), power of exclusion (PE), typical paternity index (TPI), observed heterozygosity (Hobs), and expected heterozygosity (Hexp) were calculated for all the loci. No deviations from Hardy-Weinberg equilibrium were detected for the loci after Bonferroni correction. The combined matching probability (MP), combined power of discrimination (PD) and combined power of exclusion (PE) for the 15 tested STR markers were 8.38 x 10-17, 0.999999998 and 0.0.999993866, respectively. A comparison of the locus wise allele frequencies of autosomal STR data of the Santal population with the published geographically close population data based on Nei’s genetic distance revealed that the Santal population is closely related to Munda population from Jharkhand, India. Bioresearch Commu. 7(2): 1004-1009, 2021 (June)

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Population genetic data on 15 autosomal STR loci in Bangladeshi population

Cited by 7 publications

References 19 publications

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

RETRACTED ARTICLE: Forensic characterization of 15 autosomal STRs in four populations from Xinjiang, China, and genetic relationships with neighboring populations

Genetic variation and forensic characteristic analysis of 25 STRs of a novel fluorescence co-amplification system in Chinese Southern Shaanxi Han population

Genetic polymorphism and phylogenetic analysis of 15 autosomal STR markers in the Santal indigenous population of Bangladesh

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