2003
DOI: 10.1021/jp027815+
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Polarizable Atomic Multipole Water Model for Molecular Mechanics Simulation

Abstract: A new classical empirical potential is proposed for water. The model uses a polarizable atomic multipole description of electrostatic interactions. Multipoles through the quadrupole are assigned to each atomic center based on a distributed multipole analysis (DMA) derived from large basis set molecular orbital calculations on the water monomer. Polarization is treated via self-consistent induced atomic dipoles. A modified version of Thole's interaction model is used to damp induction at short range. Repulsion-… Show more

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Cited by 1,395 publications
(2,008 citation statements)
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References 148 publications
(236 reference statements)
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“…The root-mean-square gradient value was set at 0.05 kcal/mol Å . The structural models of mutant species incorporating the amino acid substitutions were constructed using molecular modeling software, TINKER, developed by Ponder et al [13][14][15][16][17] Calculation of the numbers of atoms influenced by amino acid substitutions…”
Section: Methodsmentioning
confidence: 99%
“…The root-mean-square gradient value was set at 0.05 kcal/mol Å . The structural models of mutant species incorporating the amino acid substitutions were constructed using molecular modeling software, TINKER, developed by Ponder et al [13][14][15][16][17] Calculation of the numbers of atoms influenced by amino acid substitutions…”
Section: Methodsmentioning
confidence: 99%
“…This work is based on the AMOEBA force field. [5][6][7] The electrostatic model is built from atomic multipoles in contrast to conventional force fields that only include atomic partial charges. They are obtained from a Stone's distributed multipole analysis protocol through the GDMA program.…”
Section: Manuscript Textmentioning
confidence: 99%
“…At this level of calculations the Tinker program has been used. 22 Lowest energy structures (these procedure selects a total of 46 bimolecular adducts) for each diastereomer (relative energy lower than 2 kcal mol À1 ) have been re-optimized at the second level approach: density functional theory corrected by dispersion interactions as developed by Grimme. 23 The ab initio calculations have been performed with the 6-31++G** basis set.…”
Section: Theoretical Sectionmentioning
confidence: 99%