Androgen receptor (AR) plays a critical role in prostate cancer and male sexual differentiation. We have identified AR from a primitive vertebrate with a sex reversal characteristic, the rice field eel. AR of this species (eAR) is distinct from human AR, especially in the ligand binding domain (LBD), and its expression in gonads shows an increasing tendency during gonadal transformation from ovary via ovotestis to testis. eAR has a restricted androgen-dependent transactivation function after a nuclear translocation upon dihydrotestosterone exposure. A functional nuclear localization signal was further identified in the DNA binding domain and hinge region. Although nuclear export is CRM1-independent, eAR has a novel nuclear export signal, which is negatively charged, indicating that a nuclear export pathway may be mediated by electrostatic interaction. Further, our studies have identified critical sequences for ligand binding in the C terminus. A structure of three ␣-helices in the LBD has been conserved from eels to humans during vertebrate evolution, despite a distinct amino acid sequence. Mutation analysis confirmed that the LBD is essential for dihydrotestosterone-induced nuclear import of eAR and following transactivation function in the nucleus. In addition, eAR interacts with both Sox9a1 and Sox9a2, and their interaction regulates transactivation of eAR. Our data suggest that the primitive species conserves and especially acquires key novel domains, the nuclear export signal and LBD, for the eAR function in spite of a rapid sequence evolution.Androgen signaling is essential for male sexual differentiation, gonadal maturation, and maintenance of secondary male sexual characteristics, and, more importantly, it plays a critical role in development of prostate cancer. The action of androgens is generally mediated through their binding to and activating AR.3 The activated AR is translocated into the nucleus for a cascade of androgen signaling. AR mutations are frequent in metastatic prostate cancer, and more than 70 single-base substitutions have been described so far in prostate cancer (1, 2), which would be one of the main causes of androgen-independent prostate cancer. Although great progress has been made, development of prostate cancer is a complicated process, and its molecular mechanism remains elusive.Androgen receptor is an X-linked intracellular receptor that belongs to a large family of nuclear receptors. The main action pathway of the AR is the AR-DNA interactions, which are mediated by androgen binding and activation. The activated AR is relocated into the nucleus and binds to androgen-responsive elements of androgen-regulated genes. At AR binding sites of target genes, a transcription complex is then assembled by recruiting coregulatory proteins, coactivators/corepressors, and general transcriptional factors, which ultimately stimulates or inhibits target gene transcription (3, 4). Meanwhile, nuclear AR can be exported to the cytoplasm by ligand withdrawal through an unknown mechanism (5-7). Recen...