Platte oesters in offshorewindparken (POP)

Smaal, A.C.; Kamermans, P.; Kleissen, Frank; Duren, Luca van; Have, Tom van der

doi:10.18174/412950

Cited by 10 publications

(19 citation statements)

References 11 publications

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“…The European flat oyster, Ostrea edulis (NCBI:txid37623), is the native oyster species in Europe and its distribution ranges from the Norwegian Sea in the north to Morocco in the south, and east through the Mediterranean Sea to the Black Sea (OSPAR, 2009). The flat oyster industry has been in decline since the 19th century mainly due to its habitat destruction, overexploitation (Beck et al, 2011), irregular recruitment and apparition of the parasites Marteilia refringens and Bonamia ostreae during the 1970s (Smaal et al, 2015). In France, the O. edulis the production represents 1100 tons per year and is mainly located in Brittany.…”

Section: Introductionmentioning

confidence: 99%

Chromosomal assembly of the flat oyster (Ostrea edulisL.) genome as a new genetic ressource for aquaculture

Boutet

Monteiro

Takeuchi

et al. 2022

Preprint

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The European flat oyster (Ostrea edulis L.) is the endemic species of the European coasts. Its exploitation has been reduced during the last decades, because of the appearance of two parasites that have led to the collapse of the stocks and the strong decline of the natural oyster beds. O. edulis has been the subject of numerous studies and programs in population genetics and on the presence of the parasites Bonamia ostreae and Marteilia refringens. These studies investigated the effects of these parasites mainly on immunity at the molecular and cellular levels. Several genetic selection programs especially related to resistance to the parasite have been initiated. Within the framework of a European project (PERLE 2) which aims to produce genetic lines of O. edulis with hardiness traits (growth, survival, resistance) for the purpose of repopulating natural oyster beds in Brittany and reviving the culture of this species on the foreshore, obtaining a reference genome has proved to be essential as done recently in many bivalve species of aquaculture interest. Here, we present a chromosome-level genome assembly and annotation for the European flat oyster, generated by combining PacBio technology, Illumina, 10X linked and Hi-C sequencing. The finished assembly is 887.2 Mb with a scaffold-N50 of 97.1 Mb scaffolded on the expected 10 pseudo-chromosomes. Annotation of the genome revealed the presence of 35962 protein-coding genes. We analyzed in details the transposable elements (TE) diversity in the flat oyster genome, highlight some specificities in tRNA and miRNA composition and provide first insights in the molecular response of O. edulis to M. refringens. This genome will serve as a reference for genomic studies on O. edulis to better understand its basic physiology or developing genetic markers in breeding projects for aquaculture or natural reef restoration.

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Section: Introductionmentioning

confidence: 99%

Chromosomal assembly of the flat oyster (Ostrea edulisL.) genome as a new genetic ressource for aquaculture

Boutet

Monteiro

Takeuchi

et al. 2022

Preprint

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“…Platte oester 0 0 x L (Smaal et al, 2017a(Smaal et al, , 2017bKamermans et al, 2018bKamermans et al, , 2018aBos et al, 2021) Mogelijkheden voor platte oesters binnen offshore windparken. Kamermans et al (2018a)…”

Section: Type Bron Referentie Toelichtingunclassified

Gebiedsverkenning van drie windenergiegebieden in de Noordzee : Hollandse Kust (west), IJmuiden Ver en Ten noorden van de Waddeneilanden

Jongbloed¹,

Steenbergen²,

Tamis³

2021

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Wageningen Marine Research aanvaardt geen aansprakelijkheid voor gevolgschade, noch voor schade welke voortvloeit uit toepassingen van de resultaten van werkzaamheden of andere gegevens verkregen van Wageningen Marine Research. Opdrachtgever vrijwaart Wageningen Marine Research van aanspraken van derden in verband met deze toepassing. Alle rechten voorbehouden. Niets uit deze uitgave mag weergegeven en/of gepubliceerd worden, gefotokopieerd of op enige andere manier gebruikt worden zonder schriftelijke toestemming van de uitgever of auteur.

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“…Several previous European native oyster habitat restoration projects have documented their site selection process, either as part of a site‐specific feasibility study (e.g. Laing, Walker & Areal, 2006; Shelmerdine & Leslie, 2009; De Mesel et al, 2018; Fariñas‐Franco et al, 2018; Pouvreau et al, 2021), or as part of large‐scale habitat suitability assessments across a broad area such as the North Sea (Smaal et al, 2017; Kamermans et al, 2018; Pogoda et al, 2020b). The focus of these studies has largely been the abiotic and/or biotic factors defining habitat suitability (Laing, Walker & Areal, 2006; Shelmerdine & Leslie, 2009; Smaal et al, 2017; Kamermans et al, 2018; Pouvreau et al, 2021), with some also addressing logistical and regulatory concerns (De Mesel et al, 2018; Fariñas‐Franco et al, 2018; Pogoda et al, 2020b).…”

Section: Introductionmentioning

confidence: 99%

Site selection for European native oyster (Ostrea edulis) habitat restoration projects: An expert‐derived consensus

Hughes

Bonačić

Cameron

et al. 2023

Aquatic Conservation

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1. The European native oyster (Ostrea edulis) is a threatened keystone species which historically created extensive, physically complex, biogenic habitats throughout European seas.2. Overfishing and direct habitat destruction, subsequently compounded by pollution, invasive species, disease, predation and climate change have resulted in the functional extinction of native oyster habitat across much of its former range.3. Although oyster reef habitat remains imperilled, active restoration efforts are rapidly gaining momentum. Identifying appropriate sites for habitat restoration is an essential first step in long-term project success.4. In this study, a three-round Delphi process was conducted to determine the most important factors to consider in site selection for European native oyster habitat restoration projects.5. Consensus was reached on a total of 65 factors as being important to consider in site selection for European native oyster habitat restoration projects. In addition to the abiotic factors typically included in habitat suitability models, socio-economic and logistical factors were found to be important. Determining the temporal and spatial variability of threats to native oyster habitat restoration and understanding the biotic factors present at a proposed restoration site also influence the potential for project scale-up and longevity.

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Platte oesters in offshorewindparken (POP)

Abstract: Dit rapport is vervaardigd op verzoek van de opdrachtgever hierboven aangegeven en is zijn eigendom. Niets uit dit rapport mag weergegeven en/of gepubliceerd worden, gefotokopieerd of op enige andere manier gebruikt worden zonder schriftelijke toestemming van de opdrachtgever.

Cited by 10 publications

References 11 publications

Chromosomal assembly of the flat oyster (Ostrea edulisL.) genome as a new genetic ressource for aquaculture

Chromosomal assembly of the flat oyster (Ostrea edulisL.) genome as a new genetic ressource for aquaculture

Gebiedsverkenning van drie windenergiegebieden in de Noordzee : Hollandse Kust (west), IJmuiden Ver en Ten noorden van de Waddeneilanden

Site selection for European native oyster (Ostrea edulis) habitat restoration projects: An expert‐derived consensus

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