The nucleocapsid of vesicular stomatitis virus serves as the genomic template for transcription and replication. The viral genomic RNA is sequestered in the nucleocapsid in every step of the virus replication cycle. The structure of the nucleocapsid and the entire virion revealed how the viral genomic RNA is encapsidated and packaged in the virus. A unique mechanism for viral RNA synthesis is derived from the structure of the nuleocapsid and its interactions with the viral RNA-dependent RNA polymerase. http://ictvonline.org). The RNA genome of NSV has a negative sense (or antisense) because the genes in a NSV genome must be first transcribed into mRNAs by the viral RNA-dependent RNA polymerase (RdRp). As a result, the virion of a NSV contains not only the nucleocapsid, but also the viral RdRp. During infection, the viral RdRp enters the host cell together with the nucleocapsid and immediately starts transcription of viral genes. The key characteristic that separates NSV from all other viruses is that the template used by the viral RdRp for synthesis of virus-specific RNA, both in transcription and replication, is not the free form of the viral RNA genome, but the nucleocapsid. If a copy of free viral genomic RNA is exposed to the viral RdRp, the viral RdRp cannot recognize it as a template for RNA synthesis. The viral RdRp binds only the nucleocapsid and is capable of using the genomic RNA sequestered inside the nucleocapsid as the template to carry out viral RNA synthesis. It is therefore essential to understand the molecular mechanism of the assembly of NSV nucleocapsid and its implications in virus replication. The study of the vesicular stomatitis virus (VSV) nucleocapsid in my laboratory may be an example to illustrate this mechanism since VSV has been used as the prototype NSV for many studies.
RNA