Singlet oxygen (1O2), the major reactive oxygen species (ROS) produced in chloroplasts, has been demonstrated recently to be a highly versatile signal that induces various stress responses. In thefluorescent(flu) mutant, its release causes seedling lethality and inhibits mature plant growth. However, these drastic phenotypes are suppressed when EXECUTER1 (EX1) is absent in theflu ex1double mutant. We identified SAFEGUARD1 (SAFE1) in a screen of ethyl methanesulfonate (EMS) mutagenizedflu ex1plants for suppressor mutants with aflu-like phenotype. Influ ex1 safe1, all1O2-induced responses, including transcriptional rewiring of nuclear gene expression, return to levels, such as, or even higher than, those influ. Without SAFE1, grana margins (GMs) of chloroplast thylakoids (Thys) are specifically damaged upon1O2generation and associate with plastoglobules (PGs). SAFE1 is localized in the chloroplast stroma, and release of1O2induces SAFE1 degradation via chloroplast-originated vesicles. Our paper demonstrates thatflu-produced1O2triggers an EX1-independent signaling pathway and proves that SAFE1 suppresses this signaling pathway by protecting GMs.