Auxiliary stopping area (ASA) is the key guarantee for high-speed maglev train operation safety. Aiming at the layout of the ASA along the track, this article constructs an optimized model of ASA layout and proposes a solving algorithm based on the single target genetic algorithm by analyzing the influence factors of ASA layout. The result of the numerical experiment shows that the proposed method could fulfill the requirements of the maglev train operation safety and efficiency and optimize the cost of the ASA layout while taking the complex line situation, train tracking operation, and bidirectional operation on a single line into account.